(10 nodes) Mixed, incl. Symport, and AMMECR1 domain network (Selenomonas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AME03621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AME03622.1	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AME03623.1	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	AME03624.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	AME04739.1	2-dehydro-3-deoxyphosphogluconate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AME03625.1	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	kduI	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)
	AME03627.1	Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)
	kdgT	2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family. (321 aa)
	AME03629.1	Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)

Your Current Organism:

Selenomonas

NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AME03621.1	AME03622.1	AXE86_05790	AXE86_05795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AME03621.1	AME03623.1	AXE86_05790	AXE86_05800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AME03622.1	AME03621.1	AXE86_05795	AXE86_05790	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
AME03622.1	AME03623.1	AXE86_05795	AXE86_05800	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AME03623.1	AME03621.1	AXE86_05800	AXE86_05790	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AME03623.1	AME03622.1	AXE86_05800	AXE86_05795	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AME03623.1	AME03624.1	AXE86_05800	AXE86_05805	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AME03624.1	AME03623.1	AXE86_05805	AXE86_05800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Extradiol ring-cleavage dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AME03624.1	AME03625.1	AXE86_05805	AXE86_05815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AME03624.1	AME04739.1	AXE86_05805	AXE86_05810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-dehydro-3-deoxyphosphogluconate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AME03625.1	AME03624.1	AXE86_05815	AXE86_05805	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AME03625.1	AME03627.1	AXE86_05815	AXE86_05825	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AME03625.1	AME04739.1	AXE86_05815	AXE86_05810	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-dehydro-3-deoxyphosphogluconate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AME03625.1	kdgT	AXE86_05815	AXE86_05830	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.	0.578
AME03625.1	kduI	AXE86_05815	AXE86_05820	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.653
AME03627.1	AME03625.1	AXE86_05825	AXE86_05815	Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
AME03627.1	AME04739.1	AXE86_05825	AXE86_05810	Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-dehydro-3-deoxyphosphogluconate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.757
AME03627.1	kdgT	AXE86_05825	AXE86_05830	Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.	0.736
AME03627.1	kduI	AXE86_05825	AXE86_05820	Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.	0.942
AME03629.1	kdgT	AXE86_05835	AXE86_05830	Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.	0.434