(6 nodes) Pentose-phosphate shunt network (Selenomonas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AME04705.1	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	AME04755.1	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (470 aa)
	AME04703.1	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (471 aa)
	AME02825.1	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AME02856.1	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (236 aa)
	AME04633.1	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)

Your Current Organism:

Selenomonas

NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AME02825.1	AME02856.1	AXE86_01275	AXE86_01450	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.522
AME02825.1	AME04633.1	AXE86_01275	AXE86_11450	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AME02825.1	AME04703.1	AXE86_01275	AXE86_02340	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.770
AME02825.1	AME04705.1	AXE86_01275	AXE86_02690	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AME02825.1	AME04755.1	AXE86_01275	AXE86_07055	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.770
AME02856.1	AME02825.1	AXE86_01450	AXE86_01275	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
AME02856.1	AME04633.1	AXE86_01450	AXE86_11450	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AME02856.1	AME04703.1	AXE86_01450	AXE86_02340	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.925
AME02856.1	AME04705.1	AXE86_01450	AXE86_02690	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AME02856.1	AME04755.1	AXE86_01450	AXE86_07055	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.925
AME04633.1	AME02825.1	AXE86_11450	AXE86_01275	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AME04633.1	AME02856.1	AXE86_11450	AXE86_01450	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.990
AME04633.1	AME04703.1	AXE86_11450	AXE86_02340	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.799
AME04633.1	AME04705.1	AXE86_11450	AXE86_02690	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
AME04633.1	AME04755.1	AXE86_11450	AXE86_07055	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.799
AME04703.1	AME02825.1	AXE86_02340	AXE86_01275	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Fructose-bisphosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AME04703.1	AME02856.1	AXE86_02340	AXE86_01450	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family.	0.925
AME04703.1	AME04633.1	AXE86_02340	AXE86_11450	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
AME04703.1	AME04705.1	AXE86_02340	AXE86_02690	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AME04703.1	AME04755.1	AXE86_02340	AXE86_07055	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating); Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	0.901