STRINGSTRING
uppP uppP tadA tadA AME02715.1 AME02715.1 AME02743.1 AME02743.1 AME02770.1 AME02770.1 AME02771.1 AME02771.1 AME02772.1 AME02772.1 AME02850.1 AME02850.1 mprF mprF AME02910.1 AME02910.1 AME02928.1 AME02928.1 AME03059.1 AME03059.1 AME03109.1 AME03109.1 AME03110.1 AME03110.1 hcp hcp AME03140.1 AME03140.1 AME03143.1 AME03143.1 ubiX ubiX AME03268.1 AME03268.1 AXE86_04015 AXE86_04015 AME03405.1 AME03405.1 AME03408.1 AME03408.1 AME03440.1 AME03440.1 AME03559.1 AME03559.1 AME04576.1 AME04576.1 AME03913.1 AME03913.1 AME03925.1 AME03925.1 AME03928.1 AME03928.1 AME03968.1 AME03968.1 AME04066.1 AME04066.1 AME04067.1 AME04067.1 AME04068.1 AME04068.1 AME04079.1 AME04079.1 AME04080.1 AME04080.1 AME04081.1 AME04081.1 AME04082.1 AME04082.1 cheD cheD AME04101.1 AME04101.1 AME04104.1 AME04104.1 AME04337.1 AME04337.1 AME04341.1 AME04341.1 AME04400.1 AME04400.1 AME04452.1 AME04452.1 AME04467.1 AME04467.1 AME04524.1 AME04524.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uppPUndecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (274 aa)
tadAAdenosine deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (153 aa)
AME02715.1MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
AME02743.12-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
AME02770.1Rubrerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
AME02771.1Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
AME02772.1Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (192 aa)
AME02850.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (176 aa)
mprFLysylphosphatidylglycerol synthetase; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. (326 aa)
AME02910.1Chemotaxis protein CheX; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
AME02928.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
AME03059.1Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
AME03109.1Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
AME03110.1Metal ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
hcpHydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (548 aa)
AME03140.1Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
AME03143.1Desulfoferrodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
ubiXAromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (184 aa)
AME03268.1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
AXE86_04015Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
AME03405.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
AME03408.1Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
AME03440.1Organic solvent tolerance protein OstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (508 aa)
AME03559.1Addiction module toxin RelE; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
AME04576.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
AME03913.1Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
AME03925.1Peptide methionine sulfoxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
AME03928.1Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
AME03968.1Menaquinone biosynthesis decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiD family. (486 aa)
AME04066.1Flagellar basal body protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. (173 aa)
AME04067.1Flagellar motor switch protein FliM; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
AME04068.1Flagellar motor switch protein FliN; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
AME04079.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (205 aa)
AME04080.1Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology. (682 aa)
AME04081.1Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
AME04082.1CheY-P-specific phosphatase CheC; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
cheDChemotaxis protein CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. (161 aa)
AME04101.1Flagellar motor switch protein FliG; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
AME04104.1Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
AME04337.12-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
AME04341.12-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
AME04400.1Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
AME04452.1phenylacetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
AME04467.1Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
AME04524.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (164 aa)
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136
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