STRINGSTRING
AME02606.1 AME02606.1 hemA hemA AME02630.1 AME02630.1 sbcD sbcD AME02655.1 AME02655.1 AME02675.1 AME02675.1 AME02702.1 AME02702.1 AME02758.1 AME02758.1 rplT rplT AME02768.1 AME02768.1 AME02775.1 AME02775.1 AME02788.1 AME02788.1 AME02849.1 AME02849.1 AME02871.1 AME02871.1 leuA leuA AME02947.1 AME02947.1 AME02948.1 AME02948.1 AME02949.1 AME02949.1 AME02950.1 AME02950.1 AME02955.1 AME02955.1 AME02961.1 AME02961.1 argC argC AME03009.1 AME03009.1 AME03014.1 AME03014.1 AME03048.1 AME03048.1 AME03050.1 AME03050.1 bioB bioB AME03078.1 AME03078.1 AME03139.1 AME03139.1 AME03245.1 AME03245.1 ubiX ubiX AME03358.1 AME03358.1 pheA pheA serC serC AME03483.1 AME03483.1 AME03525.1 AME03525.1 phnW phnW AME03625.1 AME03625.1 AME03693.1 AME03693.1 AME03743.1 AME03743.1 AME04753.1 AME04753.1 AME03798.1 AME03798.1 argB argB AME03823.1 AME03823.1 AME03853.1 AME03853.1 AME03865.1 AME03865.1 AME03896.1 AME03896.1 AME03909.1 AME03909.1 AME03922.1 AME03922.1 AME03962.1 AME03962.1 fhs fhs AME03977.1 AME03977.1 AME03978.1 AME03978.1 rplV rplV rplP rplP ybeY ybeY AME04069.1 AME04069.1 AME04150.1 AME04150.1 AME04771.1 AME04771.1 AME04187.1 AME04187.1 AME04195.1 AME04195.1 AME04259.1 AME04259.1 truA truA AME04274.1 AME04274.1 AME04306.1 AME04306.1 AME04307.1 AME04307.1 AME04308.1 AME04308.1 AME04342.1 AME04342.1 ychF ychF nth nth AME04369.1 AME04369.1 nadD nadD purF purF purD purD AME04418.1 AME04418.1 AME04787.1 AME04787.1 AME04436.1 AME04436.1 AME04460.1 AME04460.1 ispE ispE AME04470.1 AME04470.1 mrnC mrnC AME04548.1 AME04548.1 AME04549.1 AME04549.1 AME04607.1 AME04607.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AME02606.1Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (293 aa)
hemAglutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (453 aa)
AME02630.1Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
sbcDExonuclease sbcCD subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (381 aa)
AME02655.1Ribosome biogenesis GTPase YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (296 aa)
AME02675.1HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
AME02702.1AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
AME02758.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thioredoxin family. (104 aa)
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (117 aa)
AME02768.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)
AME02775.1Carboxynorspermidine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
AME02788.1Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (370 aa)
AME02849.1ATP--guanido phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
AME02871.16-pyruvoyl tetrahydropterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
leuA2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily. (555 aa)
AME02947.1Nitrogenase iron protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NifH/BchL/ChlL family. (270 aa)
AME02948.1Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1232 aa)
AME02949.1Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
AME02950.1Magnesium chelatase ATPase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
AME02955.17, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
AME02961.1Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology. (973 aa)
argCN-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. (344 aa)
AME03009.1Cysteine desulfurase NifS; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
AME03014.1Metal-dependent hydrolase; Catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0173 family. (225 aa)
AME03048.1Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
AME03050.1Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (336 aa)
AME03078.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
AME03139.1Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
AME03245.1Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
ubiXAromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (184 aa)
AME03358.1Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
pheAPrephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
serC3-phosphoserine/phosphohydroxythreonine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (361 aa)
AME03483.1Photosystem reaction center subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
AME03525.1Phosphoenolpyruvate phosphomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
phnW2-aminoethylphosphonate--pyruvate aminotransferase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (364 aa)
AME03625.12-dehydro-3-deoxygluconokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
AME03693.1Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (619 aa)
AME03743.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
AME04753.1acyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
AME03798.1Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (160 aa)
argBAcetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. (294 aa)
AME03823.1DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
AME03853.1NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
AME03865.1UDP-N-acetylglucosamine 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
AME03896.1ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
AME03909.1Diaminopimelate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
AME03922.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (727 aa)
AME03962.1Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamate synthase family. (501 aa)
fhsFormate--tetrahydrofolate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family. (554 aa)
AME03977.1acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
AME03978.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
rplV50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (112 aa)
rplP50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (145 aa)
ybeYrRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (153 aa)
AME04069.1Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
AME04150.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
AME04771.1Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
AME04187.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (339 aa)
AME04195.1Vi polysaccharide biosynthesis protein VipB/TviC; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
AME04259.1Flavodoxin; An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
truAPseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (274 aa)
AME04274.1protein-N(pi)-phosphohistidine--sugar phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (621 aa)
AME04306.1Fe-S cluster assembly ATPase SufC; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
AME04307.1Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
AME04308.1ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
AME04342.1Beta-ketoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. (416 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (368 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (210 aa)
AME04369.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the acetyltransferase family. (149 aa)
nadDNicotinic acid mononucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (206 aa)
purFAmidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (483 aa)
purDPhosphoribosylamine--glycine ligase; Catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family. (419 aa)
AME04418.1tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
AME04787.1Crossover junction endodeoxyribonuclease RuvA; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (139 aa)
AME04436.1Geranyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPP/GGPP synthase family. (291 aa)
AME04460.1Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)
ispE4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (291 aa)
AME04470.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
mrnCRibonuclease III; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. (176 aa)
AME04548.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
AME04549.1MBL fold metallo-hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
AME04607.1Bifunctional riboflavin kinase/FMN adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family. (319 aa)
Your Current Organism:
Selenomonas
NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.