(4 nodes) Lyase network (Selenomonas)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	argH	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	aspA	Class II fumarate hydratase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	AME03826.1	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (430 aa)
	fumC	Class II fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (454 aa)

Your Current Organism:

Selenomonas

NCBI taxonomy Id: 713030
Other names: S. sp. oral taxon 136, Selenomonas sp. oral taxon 136

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AME03826.1	argH	AXE86_06975	AXE86_11465	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AME03826.1	aspA	AXE86_06975	AXE86_06680	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Class II fumarate hydratase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
argH	AME03826.1	AXE86_11465	AXE86_06975	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.920
argH	aspA	AXE86_11465	AXE86_06680	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Class II fumarate hydratase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
argH	fumC	AXE86_11465	AXE86_08735	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Class II fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.828
aspA	AME03826.1	AXE86_06680	AXE86_06975	Class II fumarate hydratase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.905
aspA	argH	AXE86_06680	AXE86_11465	Class II fumarate hydratase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
fumC	argH	AXE86_08735	AXE86_11465	Class II fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.828