STRINGSTRING
oppD oppD oppF oppF oppB oppB oppC oppC oppA oppA yfnA yfnA LSA_00540 LSA_00540 LSA_00550 LSA_00550 LSA_00560 LSA_00560 LSA_00570 LSA_00570 LSA_00580 LSA_00580 LSA_01000 LSA_01000 LSA_01080 LSA_01080 LSA_01090 LSA_01090 LSA_01840 LSA_01840 artM artM LSA_01860 LSA_01860 LSA_01890 LSA_01890 LSA_01990 LSA_01990 LSA_02090 LSA_02090 LSA_02110 LSA_02110 LSA_02750 LSA_02750 ybbL ybbL ybbM ybbM ansA ansA LSA_04800 LSA_04800 LSA_05630 LSA_05630 cbiO2 cbiO2 cbiO1 cbiO1 LSA_05660 LSA_05660 LSA_08500 LSA_08500 LSA_08540 LSA_08540 tcyB tcyB LSA_08610 LSA_08610 dedA dedA argG argG glnQ glnQ LSA_10490 LSA_10490 LSA_10500 LSA_10500 truA truA LSA_11030 LSA_11030 cbiO2-2 cbiO2-2 cbi01 cbi01 LSA_13240 LSA_13240 LSA_13250 LSA_13250 glnP glnP glnM glnM glnH glnH glnQ-2 glnQ-2 cls cls pepE pepE LSA_13440 LSA_13440 LSA_13450 LSA_13450 LSA_13460 LSA_13460 LSA_13470 LSA_13470
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oppDOligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily. (338 aa)
oppFOligopeptide transport ATP-binding protein oppF. (322 aa)
oppBOligopeptide transport system permease protein oppB. (319 aa)
oppCOligopeptide transport system permease protein oppC. (282 aa)
oppAOligopeptide-binding protein oppA. (595 aa)
yfnAUncharacterized amino acid permease yfnA. (467 aa)
LSA_00540Hypothetical protein. (146 aa)
LSA_00550Hypothetical protein. (302 aa)
LSA_00560Hypothetical protein. (227 aa)
LSA_00570Hypothetical protein. (369 aa)
LSA_00580Hypothetical protein. (157 aa)
LSA_01000Hypothetical protein. (201 aa)
LSA_01080Hypothetical protein. (214 aa)
LSA_01090Hypothetical protein. (473 aa)
LSA_01840Hypothetical protein. (214 aa)
artMArginine transport ATP-binding protein artM. (212 aa)
LSA_01860Hypothetical protein. (260 aa)
LSA_01890Hypothetical protein. (178 aa)
LSA_01990Hypothetical protein. (241 aa)
LSA_02090Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (294 aa)
LSA_02110Hypothetical protein. (330 aa)
LSA_02750Uncharacterized RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (445 aa)
ybbLUncharacterized ABC transporter ATP-binding protein ybbL. (201 aa)
ybbMUPF0014 inner membrane protein ybbM. (253 aa)
ansAPutative L-asparaginase. (324 aa)
LSA_04800Hypothetical protein. (651 aa)
LSA_05630Hypothetical protein. (198 aa)
cbiO2Cobalt import ATP-binding protein cbiO 2. (276 aa)
cbiO1Cobalt import ATP-binding protein cbiO 1; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (287 aa)
LSA_05660Hypothetical protein. (266 aa)
LSA_08500Hypothetical protein. (204 aa)
LSA_08540Putative amino-acid ABC transporter ATP-binding protein. (253 aa)
tcyBL-cystine transport system permease protein tcyB. (231 aa)
LSA_08610Hypothetical protein. (186 aa)
dedAProtein dedA. (230 aa)
argGArgininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (403 aa)
glnQGlutamine transport ATP-binding protein glnQ. (247 aa)
LSA_10490Hypothetical protein. (489 aa)
LSA_10500Hypothetical protein. (169 aa)
truAtRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (263 aa)
LSA_11030Hypothetical protein. (266 aa)
cbiO2-2Cobalt import ATP-binding protein cbiO 2; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (282 aa)
cbi01Cobalt import ATP-binding protein cbiO 1. (283 aa)
LSA_13240UPF0324 membrane protein. (343 aa)
LSA_13250Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (281 aa)
glnPPutative glutamine ABC transporter permease protein glnP. (218 aa)
glnMPutative glutamine ABC transporter permease protein glnM. (217 aa)
glnHABC transporter glutamine-binding protein glnH. (263 aa)
glnQ-2Glutamine transport ATP-binding protein glnQ. (270 aa)
clsCardiolipin synthetase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol. (469 aa)
pepEAminopeptidase E; Belongs to the peptidase C1 family. (440 aa)
LSA_13440Hypothetical protein; Belongs to the peptidase S26 family. (211 aa)
LSA_13450Hypothetical protein. (312 aa)
LSA_13460Hypothetical protein. (297 aa)
LSA_13470Hypothetical protein; Belongs to the LysR transcriptional regulatory family. (297 aa)
Your Current Organism:
Lactobacillus sanfranciscensis
NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304
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