(10 nodes) ATP-binding cassette (ABC) transporter complex network (Lactobacillus sanfranciscensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LSA_05500	Hypothetical protein. (104 aa)
	cydD	ATP-binding/permease protein cydD. (585 aa)
	cydC	ATP-binding/permease protein cydC. (580 aa)
	cbi01	Cobalt import ATP-binding protein cbiO 1. (283 aa)
	LSA_11490	Hypothetical protein. (241 aa)
	LSA_11500	Hypothetical protein. (262 aa)
	LSA_01090	Hypothetical protein. (473 aa)
	LSA_04010	Hypothetical protein. (229 aa)
	LSA_04020	Hypothetical protein. (275 aa)
	cbiO2	Cobalt import ATP-binding protein cbiO 2. (276 aa)

Your Current Organism:

Lactobacillus sanfranciscensis

NCBI taxonomy Id: 714313
Other names: L. sanfranciscensis TMW 1.1304, Lactobacillus sanfranciscensis TMW 1.1304

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSA_04010	LSA_04020	LSA_04010	LSA_04020	Hypothetical protein.	Hypothetical protein.	0.997
LSA_04020	LSA_04010	LSA_04020	LSA_04010	Hypothetical protein.	Hypothetical protein.	0.997
LSA_11490	LSA_11500	LSA_11490	LSA_11500	Hypothetical protein.	Hypothetical protein.	0.976
LSA_11500	LSA_11490	LSA_11500	LSA_11490	Hypothetical protein.	Hypothetical protein.	0.976
cbi01	cbiO2	LSA_11050	LSA_05640	Cobalt import ATP-binding protein cbiO 1.	Cobalt import ATP-binding protein cbiO 2.	0.909
cbiO2	cbi01	LSA_05640	LSA_11050	Cobalt import ATP-binding protein cbiO 2.	Cobalt import ATP-binding protein cbiO 1.	0.909
cbiO2	cydC	LSA_05640	LSA_07050	Cobalt import ATP-binding protein cbiO 2.	ATP-binding/permease protein cydC.	0.900
cydC	cbiO2	LSA_07050	LSA_05640	ATP-binding/permease protein cydC.	Cobalt import ATP-binding protein cbiO 2.	0.900
cydC	cydD	LSA_07050	LSA_07040	ATP-binding/permease protein cydC.	ATP-binding/permease protein cydD.	0.997
cydD	cydC	LSA_07040	LSA_07050	ATP-binding/permease protein cydD.	ATP-binding/permease protein cydC.	0.997