(7 nodes) U1 snRNA binding network (Aedes aegypti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAEL002980	AAEL002980-PA. (216 aa)
	AAEL013527	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...] (154 aa)
	AAEL011340	U1 small nuclear ribonucleoprotein 70 kd. (189 aa)
	AAEL009959	AAEL009959-PA. (2383 aa)
	AAEL009659	Heterogeneous nuclear ribonucleoprotein l (hnrnp l). (551 aa)
	AAEL009080	AAEL009080-PB. (714 aa)
	AAEL000724	AAEL000724-PA. (371 aa)

Your Current Organism:

Aedes aegypti

NCBI taxonomy Id: 7159
Other names: A. aegypti, Stegomyia aegypti, yellow fever mosquito

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAEL002980	AAEL009959	Q16H40	Q16UB0	AAEL002980-PA.	AAEL009959-PA.	0.936
AAEL002980	AAEL011340	Q16H40	Q16QA9	AAEL002980-PA.	U1 small nuclear ribonucleoprotein 70 kd.	0.969
AAEL002980	AAEL013527	Q16H40	Q16IW3	AAEL002980-PA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...]	0.990
AAEL009659	AAEL011340	Q16V78	Q16QA9	Heterogeneous nuclear ribonucleoprotein l (hnrnp l).	U1 small nuclear ribonucleoprotein 70 kd.	0.442
AAEL009959	AAEL002980	Q16UB0	Q16H40	AAEL009959-PA.	AAEL002980-PA.	0.936
AAEL009959	AAEL011340	Q16UB0	Q16QA9	AAEL009959-PA.	U1 small nuclear ribonucleoprotein 70 kd.	0.774
AAEL009959	AAEL013527	Q16UB0	Q16IW3	AAEL009959-PA.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...]	0.758
AAEL011340	AAEL002980	Q16QA9	Q16H40	U1 small nuclear ribonucleoprotein 70 kd.	AAEL002980-PA.	0.969
AAEL011340	AAEL009659	Q16QA9	Q16V78	U1 small nuclear ribonucleoprotein 70 kd.	Heterogeneous nuclear ribonucleoprotein l (hnrnp l).	0.442
AAEL011340	AAEL009959	Q16QA9	Q16UB0	U1 small nuclear ribonucleoprotein 70 kd.	AAEL009959-PA.	0.774
AAEL011340	AAEL013527	Q16QA9	Q16IW3	U1 small nuclear ribonucleoprotein 70 kd.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...]	0.972
AAEL013527	AAEL002980	Q16IW3	Q16H40	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...]	AAEL002980-PA.	0.990
AAEL013527	AAEL009959	Q16IW3	Q16UB0	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...]	AAEL009959-PA.	0.758
AAEL013527	AAEL011340	Q16IW3	Q16QA9	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 small [...]	U1 small nuclear ribonucleoprotein 70 kd.	0.972