(16 nodes) Regulation of neuronal synaptic plasticity network (Aedes aegypti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAEL002903	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1055 aa)
	AAEL005479	AAEL005479-PA. (359 aa)
	AAEL006267	AAEL006267-PA. (219 aa)
	AAEL006591	AAEL006591-PA. (837 aa)
	AAEL006651	AAEL006651-PA. (708 aa)
	AAEL006881	AAEL006881-PA. (546 aa)
	AAEL006893	AAEL006893-PA. (313 aa)
	AAEL006993	AAEL006993-PC. (471 aa)
	AAEL007288	AAEL007288-PB; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (881 aa)
	AAEL009141	AAEL009141-PA. (489 aa)
	SPZ2	AAEL001435-PA. (474 aa)
	AAEL009143	AAEL009143-PA. (443 aa)
	AAEL010283	AAEL010283-PA. (489 aa)
	AAEL010285	AAEL010285-PA. (489 aa)
	AAEL005633	AAEL005633-PA. (759 aa)
	SPZ5	AAEL001929-PA. (390 aa)

Your Current Organism:

Aedes aegypti

NCBI taxonomy Id: 7159
Other names: A. aegypti, Stegomyia aegypti, yellow fever mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAEL005479	AAEL006267	Q179X6	Q176R5	AAEL005479-PA.	AAEL006267-PA.	0.419
AAEL006267	AAEL005479	Q176R5	Q179X6	AAEL006267-PA.	AAEL005479-PA.	0.419
AAEL006881	AAEL006893	Q174I5	Q174I4	AAEL006881-PA.	AAEL006893-PA.	0.900
AAEL006893	AAEL006881	Q174I4	Q174I5	AAEL006893-PA.	AAEL006881-PA.	0.900
AAEL009141	AAEL009143	Q16WP9	Q16WP8	AAEL009141-PA.	AAEL009143-PA.	0.945
AAEL009143	AAEL009141	Q16WP8	Q16WP9	AAEL009143-PA.	AAEL009141-PA.	0.945
AAEL009143	AAEL010283	Q16WP8	Q16TC7	AAEL009143-PA.	AAEL010283-PA.	0.944
AAEL009143	AAEL010285	Q16WP8	Q16TC6	AAEL009143-PA.	AAEL010285-PA.	0.945
AAEL010283	AAEL009143	Q16TC7	Q16WP8	AAEL010283-PA.	AAEL009143-PA.	0.944
AAEL010285	AAEL009143	Q16TC6	Q16WP8	AAEL010285-PA.	AAEL009143-PA.	0.945