79 items (Aedes albopictus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RP20_CCG028170	Uncharacterized protein. (241 aa)
	RP20_CCG019117	Putative v-snare. (112 aa)
	RP20_CCG008027	Putative rna polymerase subunit l. (117 aa)
	RP20_CCG018428	Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (116 aa)
	RP20_CCG024200	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (128 aa)
	RP20_CCG008078	Putative rna polymerase ii transcription elongation factor elongin/siii subunit elongin c; Belongs to the SKP1 family. (115 aa)
	RP20_CCG006767	Putative rna polymerase subunit k. (131 aa)
	RP20_CCG002102	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...] (159 aa)
	RP20_CCG024392	Putative dna-directed rna polymerase subunit e. (173 aa)
	RP20_CCG007155	Putative rna polymerase 25-kDa subunit common to polymerases i ii and iii. (210 aa)
	RP20_CCG002470	Putative rna polymerase ii subunit polr2c/rpb3. (275 aa)
	RP20_CCG005320	Putative negative elongation factor e. (279 aa)
	RP20_CCG011083	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (271 aa)
	RP20_CCG005253	Putative rna polymer. (619 aa)
	RP20_CCG000489	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1153 aa)
	RP20_CCG001286	DUF2236 domain-containing protein. (376 aa)
	RP20_CCG001293	Uncharacterized protein. (1411 aa)
	RP20_CCG001476	Uncharacterized protein. (303 aa)
	RP20_CCG001477	Uncharacterized protein. (326 aa)
	RP20_CCG001509	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1115 aa)
	RP20_CCG001510	Uncharacterized protein. (99 aa)
	RP20_CCG002097	AHD domain-containing protein. (856 aa)
	RP20_CCG002131	Transcription elongation factor SPT5. (1091 aa)
	RP20_CCG003175	Uncharacterized protein. (703 aa)
	RP20_CCG003866	Uncharacterized protein. (586 aa)
	RP20_CCG004567	DUF2236 domain-containing protein. (334 aa)
	RP20_CCG004568	Uncharacterized protein. (604 aa)
	RP20_CCG004569	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (400 aa)
	RP20_CCG005337	Ubiquitin-like domain-containing protein. (160 aa)
	RP20_CCG005517	Uncharacterized protein. (244 aa)
	RP20_CCG005745	Uncharacterized protein. (984 aa)
	RP20_CCG006209	Plus3 domain-containing protein. (1042 aa)
	RP20_CCG006210	Uncharacterized protein. (142 aa)
	RP20_CCG006211	Plus3 domain-containing protein. (601 aa)
	RP20_CCG006686	Plus3 domain-containing protein. (786 aa)
	RP20_CCG006995	Uncharacterized protein. (157 aa)
	RP20_CCG007000	EAF domain-containing protein. (408 aa)
	RP20_CCG007114	WD_REPEATS_REGION domain-containing protein. (335 aa)
	RP20_CCG007150	Uncharacterized protein. (660 aa)
	RP20_CCG007494	Uncharacterized protein. (344 aa)
	RP20_CCG007693	Uncharacterized protein. (288 aa)
	RP20_CCG009611	Uncharacterized protein. (162 aa)
	RP20_CCG009612	DUF2236 domain-containing protein. (360 aa)
	RP20_CCG011015	Uncharacterized protein. (275 aa)
	RP20_CCG011648	CYCLIN domain-containing protein; Belongs to the cyclin family. (1966 aa)
	RP20_CCG011705	Uncharacterized protein. (96 aa)
	RP20_CCG011710	TFIIS N-terminal domain-containing protein. (723 aa)
	RP20_CCG011821	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (312 aa)
	RP20_CCG013091	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (342 aa)
	RP20_CCG013174	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	RP20_CCG013274	CYCLIN domain-containing protein; Belongs to the cyclin family. (260 aa)
	RP20_CCG014048	TPR_REGION domain-containing protein. (1126 aa)
	RP20_CCG014982	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1359 aa)
	RP20_CCG014983	Uncharacterized protein. (478 aa)
	RP20_CCG018184	Uncharacterized protein; Belongs to the cyclin family. (333 aa)
	RP20_CCG018243	Uncharacterized protein. (58 aa)
	RP20_CCG018324	Plus3 domain-containing protein. (1043 aa)
	RP20_CCG018326	Plus3 domain-containing protein. (594 aa)
	RP20_CCG019236	HDAg domain-containing protein. (1121 aa)
	RP20_CCG019237	Uncharacterized protein. (327 aa)
	RP20_CCG020338	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (749 aa)
	RP20_CCG020898	Uncharacterized protein; Belongs to the cyclin family. (385 aa)
	RP20_CCG024422	Uncharacterized protein. (542 aa)
	RP20_CCG021677	RRM domain-containing protein. (279 aa)
	RP20_CCG023775	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1887 aa)
	RP20_CCG024597	TFIIS N-terminal domain-containing protein. (802 aa)
	RP20_CCG024804	Uncharacterized protein. (813 aa)
	RP20_CCG024923	AHD domain-containing protein. (856 aa)
	RP20_CCG025132	Uncharacterized protein. (593 aa)
	RP20_CCG025651	DUF2236 domain-containing protein. (438 aa)
	RP20_CCG025662	Uncharacterized protein. (556 aa)
	RP20_CCG025935	Uncharacterized protein. (700 aa)
	RP20_CCG025941	Uncharacterized protein. (1099 aa)
	RP20_CCG026216	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (570 aa)
	RP20_CCG026882	Uncharacterized protein. (620 aa)
	RP20_CCG027040	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (488 aa)
	RP20_CCG027118	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (341 aa)
	RP20_CCG027133	Helicase ATP-binding domain-containing protein. (554 aa)
	RP20_CCG027746	MIF4G_like_2 domain-containing protein. (238 aa)

Your Current Organism:

Aedes albopictus

NCBI taxonomy Id: 7160
Other names: A. albopictus, Asian tiger mosquito, Stegomyia albopicta, forest day mosquito

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP20_CCG000489	RP20_CCG001286	A0A182G171	A0A182G2A9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DUF2236 domain-containing protein.	0.646
RP20_CCG000489	RP20_CCG001293	A0A182G171	A0A182G2B1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.461
RP20_CCG000489	RP20_CCG001476	A0A182G171	A0A182G2J9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.789
RP20_CCG000489	RP20_CCG001477	A0A182G171	A0A182G2K0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.789
RP20_CCG000489	RP20_CCG002097	A0A182G171	A0A182G3F6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	AHD domain-containing protein.	0.520
RP20_CCG000489	RP20_CCG002102	A0A182G171	A0A023EHC8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]	0.606
RP20_CCG000489	RP20_CCG002131	A0A182G171	A0A182G3H6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription elongation factor SPT5.	0.837
RP20_CCG000489	RP20_CCG002470	A0A182G171	A0A023EM53	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative rna polymerase ii subunit polr2c/rpb3.	0.984
RP20_CCG000489	RP20_CCG003175	A0A182G171	A0A182G558	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.532
RP20_CCG000489	RP20_CCG003866	A0A182G171	A0A182G697	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.739
RP20_CCG000489	RP20_CCG004567	A0A182G171	A0A182G7D7	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DUF2236 domain-containing protein.	0.646
RP20_CCG000489	RP20_CCG004568	A0A182G171	A0A182G7D8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.646
RP20_CCG000489	RP20_CCG004569	A0A182G171	A0A182G7D9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.530
RP20_CCG000489	RP20_CCG005253	A0A182G171	A0A023EUH3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative rna polymer.	0.899
RP20_CCG000489	RP20_CCG005320	A0A182G171	A0A023EMA8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Putative negative elongation factor e.	0.589
RP20_CCG000489	RP20_CCG005517	A0A182G171	A0A182G937	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.650
RP20_CCG000489	RP20_CCG005745	A0A182G171	A0A182G9H1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.461
RP20_CCG000489	RP20_CCG006209	A0A182G171	A0A182GA75	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Plus3 domain-containing protein.	0.452
RP20_CCG000489	RP20_CCG006210	A0A182G171	A0A182GA76	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.452
RP20_CCG000489	RP20_CCG006211	A0A182G171	A0A182GA77	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Plus3 domain-containing protein.	0.452