(5 nodes) Nitrogen metabolism network (Oceanicoccus sagamiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARN73579.1	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	ARN74212.1	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (1482 aa)
	ARN74213.1	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	ARN74582.1	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
	glsA	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family. (330 aa)

Your Current Organism:

Oceanicoccus sagamiensis

NCBI taxonomy Id: 716816
Other names: KCTC 23278, NBRC 107125, O. sagamiensis, gamma proteobacterium PZ-5, strain PZ-5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARN73579.1	ARN74212.1	BST96_05265	BST96_08815	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ARN73579.1	ARN74213.1	BST96_05265	BST96_08820	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
ARN73579.1	ARN74582.1	BST96_05265	BST96_10890	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.913
ARN73579.1	glsA	BST96_05265	BST96_14050	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	0.911
ARN74212.1	ARN73579.1	BST96_08815	BST96_05265	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ARN74212.1	ARN74213.1	BST96_08815	BST96_08820	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARN74212.1	ARN74582.1	BST96_08815	BST96_10890	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.996
ARN74212.1	glsA	BST96_08815	BST96_14050	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	0.941
ARN74213.1	ARN73579.1	BST96_08820	BST96_05265	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
ARN74213.1	ARN74212.1	BST96_08820	BST96_08815	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARN74213.1	ARN74582.1	BST96_08820	BST96_10890	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.957
ARN74213.1	glsA	BST96_08820	BST96_14050	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	0.907
ARN74582.1	ARN73579.1	BST96_10890	BST96_05265	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
ARN74582.1	ARN74212.1	BST96_10890	BST96_08815	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ARN74582.1	ARN74213.1	BST96_10890	BST96_08820	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
ARN74582.1	glsA	BST96_10890	BST96_14050	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	0.913
glsA	ARN73579.1	BST96_14050	BST96_05265	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	Type I glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
glsA	ARN74212.1	BST96_14050	BST96_08815	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	Glutamate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
glsA	ARN74213.1	BST96_14050	BST96_08820	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	Glutamate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
glsA	ARN74582.1	BST96_14050	BST96_10890	Glutaminase; Catalyzes the formation of glutamate from glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.913