Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFM09864.1 | EFM09866.1 | PaecuDRAFT_3367 | PaecuDRAFT_3369 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | KEGG: pjd:Pjdr2_2314 hypothetical protein. | 0.774 |
| EFM09864.1 | EFM09867.1 | PaecuDRAFT_3367 | PaecuDRAFT_3370 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | 0.703 |
| EFM09864.1 | EFM09869.1 | PaecuDRAFT_3367 | PaecuDRAFT_3372 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | PFAM: Polyprenyl synthetase; KEGG: pjd:Pjdr2_2311 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.631 |
| EFM09864.1 | argR | PaecuDRAFT_3367 | PaecuDRAFT_3368 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Arginine repressor, ArgR; Regulates arginine biosynthesis genes. | 0.878 |
| EFM09864.1 | nusB | PaecuDRAFT_3367 | PaecuDRAFT_3376 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.592 |
| EFM09864.1 | xseA | PaecuDRAFT_3367 | PaecuDRAFT_3374 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.807 |
| EFM09864.1 | xseB | PaecuDRAFT_3367 | PaecuDRAFT_3373 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.673 |
| EFM09866.1 | EFM09864.1 | PaecuDRAFT_3369 | PaecuDRAFT_3367 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.774 |
| EFM09866.1 | EFM09867.1 | PaecuDRAFT_3369 | PaecuDRAFT_3370 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | 0.662 |
| EFM09866.1 | EFM09869.1 | PaecuDRAFT_3369 | PaecuDRAFT_3372 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | PFAM: Polyprenyl synthetase; KEGG: pjd:Pjdr2_2311 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.613 |
| EFM09866.1 | argR | PaecuDRAFT_3369 | PaecuDRAFT_3368 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | Arginine repressor, ArgR; Regulates arginine biosynthesis genes. | 0.802 |
| EFM09866.1 | nusB | PaecuDRAFT_3369 | PaecuDRAFT_3376 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.607 |
| EFM09866.1 | xseA | PaecuDRAFT_3369 | PaecuDRAFT_3374 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.613 |
| EFM09866.1 | xseB | PaecuDRAFT_3369 | PaecuDRAFT_3373 | KEGG: pjd:Pjdr2_2314 hypothetical protein. | Exodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.613 |
| EFM09867.1 | EFM09864.1 | PaecuDRAFT_3370 | PaecuDRAFT_3367 | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.703 |
| EFM09867.1 | EFM09866.1 | PaecuDRAFT_3370 | PaecuDRAFT_3369 | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | KEGG: pjd:Pjdr2_2314 hypothetical protein. | 0.662 |
| EFM09867.1 | EFM09869.1 | PaecuDRAFT_3370 | PaecuDRAFT_3372 | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | PFAM: Polyprenyl synthetase; KEGG: pjd:Pjdr2_2311 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. | 0.855 |
| EFM09867.1 | EFM09874.1 | PaecuDRAFT_3370 | PaecuDRAFT_3377 | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | PFAM: Protein of unknown function DUF2273; KEGG: gym:GYMC10_2103 hypothetical protein. | 0.557 |
| EFM09867.1 | EFM09875.1 | PaecuDRAFT_3370 | PaecuDRAFT_3378 | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | PFAM: protein of unknown function DUF322; KEGG: pjd:Pjdr2_2305 hypothetical protein. | 0.520 |
| EFM09867.1 | argR | PaecuDRAFT_3370 | PaecuDRAFT_3368 | TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pjd:Pjdr2_2313 hemolysin A; SMART: RNA-binding S4 domain protein. | Arginine repressor, ArgR; Regulates arginine biosynthesis genes. | 0.711 |
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