10 items (Baudoinia panamericana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	M2MRJ5_BAUPA	Uncharacterized protein. (633 aa)
	M2NDL8_BAUPA	Uncharacterized protein. (139 aa)
	M2NJ43_BAUPA	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (77 aa)
	M2N8J5_BAUPA	NUC173 domain-containing protein. (1271 aa)
	M2N6G6_BAUPA	Robl_LC7 domain-containing protein. (138 aa)
	M2LM72_BAUPA	CAP-Gly domain-containing protein. (1303 aa)
	M2LH04_BAUPA	WD_REPEATS_REGION domain-containing protein. (678 aa)
	M2MZK0_BAUPA	Uncharacterized protein. (4301 aa)
	M2N0J1_BAUPA	Uncharacterized protein; Belongs to the actin family. (380 aa)
	M2MQ80_BAUPA	Uncharacterized protein. (115 aa)

Your Current Organism:

Baudoinia panamericana

NCBI taxonomy Id: 717646
Other names: B. panamericana UAMH 10762, Baudoinia compniacensis UAMH 10762, Baudoinia panamericana UAMH 10762

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M2LH04_BAUPA	M2LM72_BAUPA	M2LH04	M2LM72	WD_REPEATS_REGION domain-containing protein.	CAP-Gly domain-containing protein.	0.970
M2LH04_BAUPA	M2MQ80_BAUPA	M2LH04	M2MQ80	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.919
M2LH04_BAUPA	M2MRJ5_BAUPA	M2LH04	M2MRJ5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.994
M2LH04_BAUPA	M2MZK0_BAUPA	M2LH04	M2MZK0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.999
M2LH04_BAUPA	M2N0J1_BAUPA	M2LH04	M2N0J1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.773
M2LH04_BAUPA	M2N6G6_BAUPA	M2LH04	M2N6G6	WD_REPEATS_REGION domain-containing protein.	Robl_LC7 domain-containing protein.	0.995
M2LH04_BAUPA	M2NDL8_BAUPA	M2LH04	M2NDL8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.991
M2LH04_BAUPA	M2NJ43_BAUPA	M2LH04	M2NJ43	WD_REPEATS_REGION domain-containing protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.991
M2LM72_BAUPA	M2LH04_BAUPA	M2LM72	M2LH04	CAP-Gly domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.970
M2LM72_BAUPA	M2MQ80_BAUPA	M2LM72	M2MQ80	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.650
M2LM72_BAUPA	M2MRJ5_BAUPA	M2LM72	M2MRJ5	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.948
M2LM72_BAUPA	M2MZK0_BAUPA	M2LM72	M2MZK0	CAP-Gly domain-containing protein.	Uncharacterized protein.	0.967
M2LM72_BAUPA	M2N0J1_BAUPA	M2LM72	M2N0J1	CAP-Gly domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.908
M2LM72_BAUPA	M2N6G6_BAUPA	M2LM72	M2N6G6	CAP-Gly domain-containing protein.	Robl_LC7 domain-containing protein.	0.653
M2LM72_BAUPA	M2NJ43_BAUPA	M2LM72	M2NJ43	CAP-Gly domain-containing protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.739
M2MQ80_BAUPA	M2LH04_BAUPA	M2MQ80	M2LH04	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.919
M2MQ80_BAUPA	M2LM72_BAUPA	M2MQ80	M2LM72	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.650
M2MQ80_BAUPA	M2MRJ5_BAUPA	M2MQ80	M2MRJ5	Uncharacterized protein.	Uncharacterized protein.	0.678
M2MQ80_BAUPA	M2MZK0_BAUPA	M2MQ80	M2MZK0	Uncharacterized protein.	Uncharacterized protein.	0.900
M2MQ80_BAUPA	M2N6G6_BAUPA	M2MQ80	M2N6G6	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.822