STRINGSTRING
AL1_00300 AL1_00300 AL1_00310 AL1_00310 AL1_00320 AL1_00320 AL1_00370 AL1_00370 AL1_03910 AL1_03910 AL1_06070 AL1_06070 AL1_07620 AL1_07620 AL1_07630 AL1_07630
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AL1_00300Hypothetical protein. (35 aa)
AL1_00310Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (555 aa)
AL1_00320Hypothetical protein. (689 aa)
AL1_00370Glycerophosphoryl diester phosphodiesterase. (1149 aa)
AL1_03910RecB family exonuclease. (946 aa)
AL1_06070Phage integrase family; Belongs to the 'phage' integrase family. (416 aa)
AL1_07620ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily. (1042 aa)
AL1_07630Hypothetical protein. (870 aa)
Your Current Organism:
Alistipes shahii
NCBI taxonomy Id: 717959
Other names: A. shahii WAL 8301, Alistipes shahii WAL 8301, Alistipes shahii str. WAL 8301, Alistipes shahii strain WAL 8301, Alistipes sp. WAL 8301
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