Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AL1_02610 | AL1_02620 | AL1_02610 | AL1_02620 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. | DNA topoisomerase IV subunit A. | 0.995 |
| AL1_02610 | topA | AL1_02610 | AL1_17250 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.413 |
| AL1_02610 | truB | AL1_02610 | AL1_17290 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.598 |
| AL1_02620 | AL1_02610 | AL1_02620 | AL1_02610 | DNA topoisomerase IV subunit A. | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. | 0.995 |
| AL1_02620 | AL1_10360 | AL1_02620 | AL1_10360 | DNA topoisomerase IV subunit A. | Chorismate mutase. | 0.473 |
| AL1_02620 | AL1_26280 | AL1_02620 | AL1_26280 | DNA topoisomerase IV subunit A. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.514 |
| AL1_02620 | gyrB | AL1_02620 | AL1_04800 | DNA topoisomerase IV subunit A. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.977 |
| AL1_02620 | topA | AL1_02620 | AL1_17250 | DNA topoisomerase IV subunit A. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.407 |
| AL1_02860 | AL1_15100 | AL1_02860 | AL1_15100 | Pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.491 |
| AL1_02860 | truA | AL1_02860 | AL1_27720 | Pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.454 |
| AL1_02860 | truB | AL1_02860 | AL1_17290 | Pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.480 |
| AL1_04480 | AL1_18330 | AL1_04480 | AL1_18330 | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes. | 0.903 |
| AL1_04840 | AL1_15100 | AL1_04840 | AL1_15100 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.550 |
| AL1_04840 | AL1_17030 | AL1_04840 | AL1_17030 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Ribosomal large subunit pseudouridine synthase D. | 0.606 |
| AL1_04840 | AL1_21370 | AL1_04840 | AL1_21370 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | FKBP-type peptidyl-prolyl cis-trans isomerases 1. | 0.571 |
| AL1_04840 | AL1_21380 | AL1_04840 | AL1_21380 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | FKBP-type peptidyl-prolyl cis-trans isomerases 1. | 0.440 |
| AL1_04840 | AL1_24700 | AL1_04840 | AL1_24700 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Parvulin-like peptidyl-prolyl isomerase. | 0.401 |
| AL1_04840 | AL1_29970 | AL1_04840 | AL1_29970 | Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | PPIC-type PPIASE domain. | 0.401 |
| AL1_05120 | AL1_08260 | AL1_05120 | AL1_08260 | Phosphomannomutase. | Mannose-6-phosphate isomerase, type 1. | 0.917 |
| AL1_05120 | AL1_24700 | AL1_05120 | AL1_24700 | Phosphomannomutase. | Parvulin-like peptidyl-prolyl isomerase. | 0.460 |
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