(67 nodes) Glycolysis / Gluconeogenesis, and Pentose phosphate pathway network (Microbispora sp. GMKU363)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001417795_00042	Unannotated protein. (268 aa)
	GCA_001417795_00052	Unannotated protein. (155 aa)
	GCA_001417795_00347	Unannotated protein. (317 aa)
	GCA_001417795_00702	Unannotated protein. (218 aa)
	GCA_001417795_00704	Unannotated protein. (85 aa)
	GCA_001417795_00705	Unannotated protein. (148 aa)
	GCA_001417795_00706	Unannotated protein. (78 aa)
	GCA_001417795_00709	Unannotated protein. (446 aa)
	GCA_001417795_00881	Unannotated protein. (554 aa)
	GCA_001417795_01008	Unannotated protein. (294 aa)
	GCA_001417795_01009	Unannotated protein. (261 aa)
	GCA_001417795_01010	Unannotated protein. (292 aa)
	GCA_001417795_01011	Unannotated protein. (311 aa)
	GCA_001417795_01012	Unannotated protein. (273 aa)
	GCA_001417795_01324	Unannotated protein. (342 aa)
	GCA_001417795_01399	Unannotated protein. (398 aa)
	GCA_001417795_01400	Unannotated protein. (644 aa)
	GCA_001417795_01401	Unannotated protein. (329 aa)
	GCA_001417795_01402	Unannotated protein. (206 aa)
	GCA_001417795_01424	Unannotated protein. (295 aa)
	GCA_001417795_01480	Unannotated protein. (336 aa)
	GCA_001417795_01992	Unannotated protein. (216 aa)
	GCA_001417795_02001	Unannotated protein. (234 aa)
	GCA_001417795_02124	Unannotated protein. (400 aa)
	GCA_001417795_02347	Unannotated protein. (616 aa)
	GCA_001417795_02596	Unannotated protein. (339 aa)
	GCA_001417795_02597	Unannotated protein. (293 aa)
	GCA_001417795_03081	Unannotated protein. (777 aa)
	GCA_001417795_03227	Unannotated protein. (312 aa)
	GCA_001417795_03238	Unannotated protein. (340 aa)
	GCA_001417795_03402	Unannotated protein. (426 aa)
	GCA_001417795_03432	Unannotated protein. (331 aa)
	GCA_001417795_03936	Unannotated protein. (340 aa)
	GCA_001417795_04148	Unannotated protein. (402 aa)
	GCA_001417795_04304	Unannotated protein. (340 aa)
	GCA_001417795_04356	Unannotated protein. (403 aa)
	GCA_001417795_04423	Unannotated protein. (212 aa)
	GCA_001417795_04540	Unannotated protein. (396 aa)
	GCA_001417795_04547	Unannotated protein. (391 aa)
	GCA_001417795_04552	Unannotated protein. (404 aa)
	GCA_001417795_04824	Unannotated protein. (314 aa)
	GCA_001417795_04838	Unannotated protein. (363 aa)
	GCA_001417795_04959	Unannotated protein. (253 aa)
	GCA_001417795_04960	Unannotated protein. (314 aa)
	GCA_001417795_04961	Unannotated protein. (372 aa)
	GCA_001417795_04962	Unannotated protein. (102 aa)
	GCA_001417795_04963	Unannotated protein. (152 aa)
	GCA_001417795_04964	Unannotated protein. (342 aa)
	GCA_001417795_04965	Unannotated protein. (89 aa)
	GCA_001417795_04966	Unannotated protein. (564 aa)
	GCA_001417795_05159	Unannotated protein. (684 aa)
	GCA_001417795_05160	Unannotated protein. (367 aa)
	GCA_001417795_05161	Unannotated protein. (541 aa)
	GCA_001417795_05162	Unannotated protein. (548 aa)
	GCA_001417795_05163	Unannotated protein. (306 aa)
	GCA_001417795_05164	Unannotated protein. (258 aa)
	GCA_001417795_05187	Unannotated protein. (259 aa)
	GCA_001417795_05188	Unannotated protein. (395 aa)
	GCA_001417795_05189	Unannotated protein. (334 aa)
	GCA_001417795_05219	Unannotated protein. (300 aa)
	GCA_001417795_05271	Unannotated protein. (479 aa)
	GCA_001417795_05545	Unannotated protein. (407 aa)
	GCA_001417795_05963	Unannotated protein. (476 aa)
	GCA_001417795_06155	Unannotated protein. (247 aa)
	GCA_001417795_06668	Unannotated protein. (624 aa)
	GCA_001417795_06719	Unannotated protein. (224 aa)
	GCA_001417795_06852	Unannotated protein. (419 aa)

Your Current Organism:

Microbispora sp. GMKU363

NCBI taxonomy Id: 718014
Other names: M. sp. GMKU363

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001417795_00042	GCA_001417795_00052	Unannotated protein.	Unannotated protein.	0.549
GCA_001417795_00042	GCA_001417795_01011	Unannotated protein.	Unannotated protein.	0.795
GCA_001417795_00042	GCA_001417795_04960	Unannotated protein.	Unannotated protein.	0.781
GCA_001417795_00042	GCA_001417795_04966	Unannotated protein.	Unannotated protein.	0.528
GCA_001417795_00042	GCA_001417795_06668	Unannotated protein.	Unannotated protein.	0.836
GCA_001417795_00052	GCA_001417795_00042	Unannotated protein.	Unannotated protein.	0.549
GCA_001417795_00052	GCA_001417795_00881	Unannotated protein.	Unannotated protein.	0.732
GCA_001417795_00052	GCA_001417795_01008	Unannotated protein.	Unannotated protein.	0.864
GCA_001417795_00052	GCA_001417795_01009	Unannotated protein.	Unannotated protein.	0.549
GCA_001417795_00052	GCA_001417795_01011	Unannotated protein.	Unannotated protein.	0.860
GCA_001417795_00052	GCA_001417795_02001	Unannotated protein.	Unannotated protein.	0.529
GCA_001417795_00052	GCA_001417795_02347	Unannotated protein.	Unannotated protein.	0.895
GCA_001417795_00052	GCA_001417795_02596	Unannotated protein.	Unannotated protein.	0.897
GCA_001417795_00052	GCA_001417795_02597	Unannotated protein.	Unannotated protein.	0.931
GCA_001417795_00052	GCA_001417795_03227	Unannotated protein.	Unannotated protein.	0.936
GCA_001417795_00052	GCA_001417795_03238	Unannotated protein.	Unannotated protein.	0.584
GCA_001417795_00052	GCA_001417795_03402	Unannotated protein.	Unannotated protein.	0.613
GCA_001417795_00052	GCA_001417795_03936	Unannotated protein.	Unannotated protein.	0.407
GCA_001417795_00052	GCA_001417795_04838	Unannotated protein.	Unannotated protein.	0.751
GCA_001417795_00052	GCA_001417795_04959	Unannotated protein.	Unannotated protein.	0.549