(37 nodes) Streptomycin biosynthesis network (Microbispora sp. GMKU363)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001417795_04148	Unannotated protein. (402 aa)
	GCA_001417795_00347	Unannotated protein. (317 aa)
	GCA_001417795_00561	Unannotated protein. (387 aa)
	GCA_001417795_01004	Unannotated protein. (347 aa)
	GCA_001417795_01005	Unannotated protein. (313 aa)
	GCA_001417795_01006	Unannotated protein. (378 aa)
	GCA_001417795_01007	Unannotated protein. (455 aa)
	GCA_001417795_01324	Unannotated protein. (342 aa)
	GCA_001417795_01399	Unannotated protein. (398 aa)
	GCA_001417795_01401	Unannotated protein. (329 aa)
	GCA_001417795_01429	Unannotated protein. (340 aa)
	GCA_001417795_01844	Unannotated protein. (374 aa)
	GCA_001417795_01845	Unannotated protein. (317 aa)
	GCA_001417795_01846	Unannotated protein. (292 aa)
	GCA_001417795_01847	Unannotated protein. (202 aa)
	GCA_001417795_01852	Unannotated protein. (423 aa)
	GCA_001417795_01861	Unannotated protein. (189 aa)
	GCA_001417795_02124	Unannotated protein. (400 aa)
	GCA_001417795_03195	Unannotated protein. (359 aa)
	GCA_001417795_03432	Unannotated protein. (331 aa)
	GCA_001417795_04000	Unannotated protein. (321 aa)
	GCA_001417795_04001	Unannotated protein. (355 aa)
	GCA_001417795_04178	Unannotated protein. (291 aa)
	GCA_001417795_04304	Unannotated protein. (340 aa)
	GCA_001417795_04356	Unannotated protein. (403 aa)
	GCA_001417795_04540	Unannotated protein. (396 aa)
	GCA_001417795_04547	Unannotated protein. (391 aa)
	GCA_001417795_04552	Unannotated protein. (404 aa)
	GCA_001417795_04824	Unannotated protein. (314 aa)
	GCA_001417795_05227	Unannotated protein. (383 aa)
	GCA_001417795_05367	Unannotated protein. (300 aa)
	GCA_001417795_05545	Unannotated protein. (407 aa)
	GCA_001417795_05742	Unannotated protein. (306 aa)
	GCA_001417795_06745	Unannotated protein. (369 aa)
	GCA_001417795_06757	Unannotated protein. (325 aa)
	GCA_001417795_06772	Unannotated protein. (330 aa)
	GCA_001417795_06852	Unannotated protein. (419 aa)

Your Current Organism:

Microbispora sp. GMKU363

NCBI taxonomy Id: 718014
Other names: M. sp. GMKU363

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001417795_00347	GCA_001417795_01324	Unannotated protein.	Unannotated protein.	0.611
GCA_001417795_00347	GCA_001417795_01401	Unannotated protein.	Unannotated protein.	0.848
GCA_001417795_00347	GCA_001417795_02124	Unannotated protein.	Unannotated protein.	0.762
GCA_001417795_00347	GCA_001417795_03432	Unannotated protein.	Unannotated protein.	0.857
GCA_001417795_00347	GCA_001417795_04304	Unannotated protein.	Unannotated protein.	0.879
GCA_001417795_00347	GCA_001417795_04547	Unannotated protein.	Unannotated protein.	0.753
GCA_001417795_00347	GCA_001417795_04824	Unannotated protein.	Unannotated protein.	0.882
GCA_001417795_00347	GCA_001417795_06852	Unannotated protein.	Unannotated protein.	0.773
GCA_001417795_01004	GCA_001417795_01005	Unannotated protein.	Unannotated protein.	0.751
GCA_001417795_01004	GCA_001417795_01006	Unannotated protein.	Unannotated protein.	0.664
GCA_001417795_01004	GCA_001417795_01007	Unannotated protein.	Unannotated protein.	0.671
GCA_001417795_01005	GCA_001417795_01004	Unannotated protein.	Unannotated protein.	0.751
GCA_001417795_01005	GCA_001417795_01006	Unannotated protein.	Unannotated protein.	0.931
GCA_001417795_01005	GCA_001417795_01007	Unannotated protein.	Unannotated protein.	0.842
GCA_001417795_01006	GCA_001417795_01004	Unannotated protein.	Unannotated protein.	0.664
GCA_001417795_01006	GCA_001417795_01005	Unannotated protein.	Unannotated protein.	0.931
GCA_001417795_01006	GCA_001417795_01007	Unannotated protein.	Unannotated protein.	0.951
GCA_001417795_01007	GCA_001417795_01004	Unannotated protein.	Unannotated protein.	0.671
GCA_001417795_01007	GCA_001417795_01005	Unannotated protein.	Unannotated protein.	0.842
GCA_001417795_01007	GCA_001417795_01006	Unannotated protein.	Unannotated protein.	0.951