11 items (Bos mutus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VPS26B	Vacuolar protein sorting-associated protein 26B. (324 aa)
	SNX1	Sorting nexin-1. (508 aa)
	SNX2	Sorting nexin-2. (523 aa)
	SNX3	Sorting nexin-3. (162 aa)
	WLS	Protein wntless-like protein. (541 aa)
	LOC102284329	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (674 aa)
	VPS35	Vacuolar protein sorting-associated protein 35. (796 aa)
	VPS29	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway. (214 aa)
	VPS26A	Vacuolar protein sorting-associated protein 26A. (302 aa)
	TBC1D5	TBC1 domain family member 5. (319 aa)
	SNX12	Sorting nexin-12. (175 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102284329	SNX1	ENSBMUP00000013642	ENSBMUP00000005458	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sorting nexin-1.	0.932
LOC102284329	SNX12	ENSBMUP00000013642	ENSBMUP00000033961	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sorting nexin-12.	0.840
LOC102284329	SNX2	ENSBMUP00000013642	ENSBMUP00000012491	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sorting nexin-2.	0.921
LOC102284329	SNX3	ENSBMUP00000013642	ENSBMUP00000013445	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Sorting nexin-3.	0.943
LOC102284329	TBC1D5	ENSBMUP00000013642	ENSBMUP00000029507	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	TBC1 domain family member 5.	0.771
LOC102284329	VPS26A	ENSBMUP00000013642	ENSBMUP00000029175	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 26A.	0.990
LOC102284329	VPS26B	ENSBMUP00000013642	ENSBMUP00000000935	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 26B.	0.965
LOC102284329	VPS29	ENSBMUP00000013642	ENSBMUP00000027997	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.991
LOC102284329	WLS	ENSBMUP00000013642	ENSBMUP00000013535	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Protein wntless-like protein.	0.659
SNX1	LOC102284329	ENSBMUP00000005458	ENSBMUP00000013642	Sorting nexin-1.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.932
SNX1	SNX2	ENSBMUP00000005458	ENSBMUP00000012491	Sorting nexin-1.	Sorting nexin-2.	0.993
SNX1	SNX3	ENSBMUP00000005458	ENSBMUP00000013445	Sorting nexin-1.	Sorting nexin-3.	0.610
SNX1	TBC1D5	ENSBMUP00000005458	ENSBMUP00000029507	Sorting nexin-1.	TBC1 domain family member 5.	0.559
SNX1	VPS26A	ENSBMUP00000005458	ENSBMUP00000029175	Sorting nexin-1.	Vacuolar protein sorting-associated protein 26A.	0.876
SNX1	VPS26B	ENSBMUP00000005458	ENSBMUP00000000935	Sorting nexin-1.	Vacuolar protein sorting-associated protein 26B.	0.875
SNX1	VPS29	ENSBMUP00000005458	ENSBMUP00000027997	Sorting nexin-1.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.975
SNX1	VPS35	ENSBMUP00000005458	ENSBMUP00000014915	Sorting nexin-1.	Vacuolar protein sorting-associated protein 35.	0.932
SNX12	LOC102284329	ENSBMUP00000033961	ENSBMUP00000013642	Sorting nexin-12.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.840
SNX12	SNX3	ENSBMUP00000033961	ENSBMUP00000013445	Sorting nexin-12.	Sorting nexin-3.	0.901
SNX12	VPS26A	ENSBMUP00000033961	ENSBMUP00000029175	Sorting nexin-12.	Vacuolar protein sorting-associated protein 26A.	0.839