(33 nodes) Mixed, incl. Virion, and Nuclear factor hnRNPA1 network (Bos mutus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSBMUP00000001481	Heterogeneous nuclear ribonucleoprotein K-like. (90 aa)
	SSB	Lupus La protein-like protein. (404 aa)
	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1. (353 aa)
	ILF3	Interleukin enhancer-binding factor 3. (899 aa)
	YBX1	Y-box binding protein 1. (319 aa)
	ENSBMUP00000009417	annotation not available (85 aa)
	HNRNPU	Heterogeneous nuclear ribonucleoprotein U. (602 aa)
	HNRNPK	Heterogeneous nuclear ribonucleoprotein K. (464 aa)
	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B. (259 aa)
	ENSBMUP00000011323	annotation not available (102 aa)
	M91_02982	Heterogeneous nuclear ribonucleoprotein G. (80 aa)
	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2. (449 aa)
	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q. (562 aa)
	PTBP1	Polypyrimidine tract-binding protein 1. (557 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (124 aa)
	HNRNPR	Heterogeneous nuclear ribonucleoprotein R. (633 aa)
	HNRNPL	Heterogeneous nuclear ribonucleoprotein L. (589 aa)
	LOC102269300	Heterogeneous nuclear ribonucleoproteins A2/B1. (366 aa)
	ENSBMUP00000022743	annotation not available (299 aa)
	LOC102267737	Uncharacterized protein. (315 aa)
	HNRNPC	Heterogeneous nuclear ribonucleoprotein C. (307 aa)
	LOC102280569	Heterogeneous nuclear ribonucleoprotein A1. (316 aa)
	PCBP1	Poly(RC)-binding protein 1. (356 aa)
	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1. (373 aa)
	ENSBMUP00000028715	annotation not available (91 aa)
	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0. (345 aa)
	PCBP2	Poly(RC)-binding protein 2. (467 aa)
	LOC102265903	Heterogeneous nuclear ribonucleoprotein F. (414 aa)
	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3. (351 aa)
	LOC102265531	Heterogeneous nuclear ribonucleoprotein F-like. (396 aa)
	ENSBMUP00000034434	Uncharacterized LOC102278963. (255 aa)
	M91_04889	Uncharacterized protein. (365 aa)
	ILF2	Interleukin enhancer-binding factor 2. (390 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSBMUP00000001481	ENSBMUP00000009417	ENSBMUP00000001481	ENSBMUP00000009417	Heterogeneous nuclear ribonucleoprotein K-like.	annotation not available	0.827
ENSBMUP00000001481	ENSBMUP00000011323	ENSBMUP00000001481	ENSBMUP00000011323	Heterogeneous nuclear ribonucleoprotein K-like.	annotation not available	0.701
ENSBMUP00000001481	ENSBMUP00000022743	ENSBMUP00000001481	ENSBMUP00000022743	Heterogeneous nuclear ribonucleoprotein K-like.	annotation not available	0.570
ENSBMUP00000001481	ENSBMUP00000028715	ENSBMUP00000001481	ENSBMUP00000028715	Heterogeneous nuclear ribonucleoprotein K-like.	annotation not available	0.701
ENSBMUP00000001481	ENSBMUP00000034434	ENSBMUP00000001481	ENSBMUP00000034434	Heterogeneous nuclear ribonucleoprotein K-like.	Uncharacterized LOC102278963.	0.742
ENSBMUP00000001481	HNRNPA1	ENSBMUP00000001481	ENSBMUP00000027985	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein A1.	0.570
ENSBMUP00000001481	HNRNPA2B1	ENSBMUP00000001481	ENSBMUP00000003914	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoproteins A2/B1.	0.742
ENSBMUP00000001481	HNRNPAB	ENSBMUP00000001481	ENSBMUP00000010605	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein A/B.	0.622
ENSBMUP00000001481	HNRNPC	ENSBMUP00000001481	ENSBMUP00000024965	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein C.	0.701
ENSBMUP00000001481	HNRNPD	ENSBMUP00000001481	ENSBMUP00000028830	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein D0.	0.709
ENSBMUP00000001481	HNRNPH2	ENSBMUP00000001481	ENSBMUP00000015148	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein H2.	0.662
ENSBMUP00000001481	HNRNPH3	ENSBMUP00000001481	ENSBMUP00000030518	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein H3.	0.646
ENSBMUP00000001481	HNRNPK	ENSBMUP00000001481	ENSBMUP00000009562	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein K.	0.900
ENSBMUP00000001481	HNRNPL	ENSBMUP00000001481	ENSBMUP00000019120	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein L.	0.911
ENSBMUP00000001481	HNRNPR	ENSBMUP00000001481	ENSBMUP00000019015	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein R.	0.829
ENSBMUP00000001481	HNRNPU	ENSBMUP00000001481	ENSBMUP00000009477	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein U.	0.827
ENSBMUP00000001481	ILF2	ENSBMUP00000001481	ENSBMUP00000036079	Heterogeneous nuclear ribonucleoprotein K-like.	Interleukin enhancer-binding factor 2.	0.517
ENSBMUP00000001481	ILF3	ENSBMUP00000001481	ENSBMUP00000005428	Heterogeneous nuclear ribonucleoprotein K-like.	Interleukin enhancer-binding factor 3.	0.637
ENSBMUP00000001481	LOC102265531	ENSBMUP00000001481	ENSBMUP00000033845	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein F-like.	0.648
ENSBMUP00000001481	LOC102265903	ENSBMUP00000001481	ENSBMUP00000030191	Heterogeneous nuclear ribonucleoprotein K-like.	Heterogeneous nuclear ribonucleoprotein F.	0.648