(15 nodes) RNA polymerase II preinitiation complex assembly network (Bos mutus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TAF3	Transcription initiation factor TFIID subunit 3. (932 aa)
	TAF5	Transcription initiation factor TFIID subunit 5. (796 aa)
	TAF12	Transcription initiation factor TFIID subunit 12. (204 aa)
	TAF13	Transcription initiation factor TFIID subunit 13. (124 aa)
	TAF4	Transcription initiation factor TFIID subunit 4. (720 aa)
	TAF11	Transcription initiation factor TFIID subunit 11. (210 aa)
	TAF10	Transcription initiation factor TFIID subunit 10. (218 aa)
	M91_07424	TAFII28 domain-containing protein. (198 aa)
	M91_11796	TFIID_20kDa domain-containing protein. (199 aa)
	TAF8	Transcription initiation factor TFIID subunit 8. (310 aa)
	TAF4B	Transcription initiation factor TFIID subunit 4B. (863 aa)
	M91_09432	Transcription initiation factor TFIID subunit 9. (286 aa)
	TAF6	Transcription initiation factor TFIID subunit 6. (678 aa)
	TAF1	Transcription initiation factor TFIID subunit 1. (1899 aa)
	TAF2	Transcription initiation factor TFIID subunit 2. (1251 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M91_07424	M91_09432	ENSBMUP00000017173	ENSBMUP00000031016	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 9.	0.955
M91_07424	M91_11796	ENSBMUP00000017173	ENSBMUP00000017289	TAFII28 domain-containing protein.	TFIID_20kDa domain-containing protein.	0.966
M91_07424	TAF1	ENSBMUP00000017173	ENSBMUP00000033705	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 1.	0.980
M91_07424	TAF10	ENSBMUP00000017173	ENSBMUP00000016948	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 10.	0.974
M91_07424	TAF12	ENSBMUP00000017173	ENSBMUP00000002690	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 12.	0.966
M91_07424	TAF13	ENSBMUP00000017173	ENSBMUP00000005074	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 13.	0.970
M91_07424	TAF2	ENSBMUP00000017173	ENSBMUP00000035173	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 2.	0.983
M91_07424	TAF3	ENSBMUP00000017173	ENSBMUP00000000562	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 3.	0.983
M91_07424	TAF4	ENSBMUP00000017173	ENSBMUP00000011179	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 4.	0.984
M91_07424	TAF4B	ENSBMUP00000017173	ENSBMUP00000021721	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 4B.	0.975
M91_07424	TAF5	ENSBMUP00000017173	ENSBMUP00000001194	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 5.	0.975
M91_07424	TAF6	ENSBMUP00000017173	ENSBMUP00000031776	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 6.	0.976
M91_07424	TAF8	ENSBMUP00000017173	ENSBMUP00000018265	TAFII28 domain-containing protein.	Transcription initiation factor TFIID subunit 8.	0.967
M91_09432	M91_07424	ENSBMUP00000031016	ENSBMUP00000017173	Transcription initiation factor TFIID subunit 9.	TAFII28 domain-containing protein.	0.955
M91_09432	M91_11796	ENSBMUP00000031016	ENSBMUP00000017289	Transcription initiation factor TFIID subunit 9.	TFIID_20kDa domain-containing protein.	0.968
M91_09432	TAF1	ENSBMUP00000031016	ENSBMUP00000033705	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 1.	0.981
M91_09432	TAF10	ENSBMUP00000031016	ENSBMUP00000016948	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 10.	0.985
M91_09432	TAF11	ENSBMUP00000031016	ENSBMUP00000014398	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 11.	0.964
M91_09432	TAF12	ENSBMUP00000031016	ENSBMUP00000002690	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 12.	0.968
M91_09432	TAF13	ENSBMUP00000031016	ENSBMUP00000005074	Transcription initiation factor TFIID subunit 9.	Transcription initiation factor TFIID subunit 13.	0.959