20 items (Bos mutus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DCN	Decorin; May affect the rate of fibrils formation. (360 aa)
	MIEF1	Smith-Magenis syndrome chromosomal region candidate 7 protein-like protein. (463 aa)
	RALA	Ras-related protein Ral-A. (206 aa)
	DNM1L	Dynamin 1-like protein. (749 aa)
	FIS1	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering. (181 aa)
	KDR	Kinase insert domain protein receptor. (1353 aa)
	LOC102284329	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (674 aa)
	SPIRE1	Protein spire-like protein 1. (623 aa)
	VPS35	Vacuolar protein sorting-associated protein 35. (796 aa)
	DDHD2	Phospholipase DDHD2. (708 aa)
	RALBP1	RalA-binding protein 1. (634 aa)
	BNIP3	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3. (212 aa)
	MFF	Mitochondrial fission factor. (353 aa)
	MIEF2	Smith-Magenis syndrome chromosomal region candidate 7 protein. (458 aa)
	AURKA	Serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily. (402 aa)
	MCU	Coiled-coil domain-containing protein 109A. (314 aa)
	DDHD1	DDHD domain containing 1. (886 aa)
	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial. (140 aa)
	PINK1	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily. (468 aa)
	MUL1	Mitochondrial E3 ubiquitin protein ligase 1. (351 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNIP3	FIS1	ENSBMUP00000017856	ENSBMUP00000007963	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3.	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	0.449
BNIP3	PINK1	ENSBMUP00000017856	ENSBMUP00000029802	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3.	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily.	0.679
DCN	KDR	ENSBMUP00000036182	ENSBMUP00000009699	Decorin; May affect the rate of fibrils formation.	Kinase insert domain protein receptor.	0.441
DDHD1	DDHD2	ENSBMUP00000028391	ENSBMUP00000015227	DDHD domain containing 1.	Phospholipase DDHD2.	0.938
DDHD2	DDHD1	ENSBMUP00000015227	ENSBMUP00000028391	Phospholipase DDHD2.	DDHD domain containing 1.	0.938
DNM1L	FIS1	ENSBMUP00000007080	ENSBMUP00000007963	Dynamin 1-like protein.	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	0.832
DNM1L	MFF	ENSBMUP00000007080	ENSBMUP00000018381	Dynamin 1-like protein.	Mitochondrial fission factor.	0.851
DNM1L	MIEF1	ENSBMUP00000007080	ENSBMUP00000000721	Dynamin 1-like protein.	Smith-Magenis syndrome chromosomal region candidate 7 protein-like protein.	0.530
DNM1L	MIEF2	ENSBMUP00000007080	ENSBMUP00000020702	Dynamin 1-like protein.	Smith-Magenis syndrome chromosomal region candidate 7 protein.	0.911
DNM1L	PGAM5	ENSBMUP00000007080	ENSBMUP00000029232	Dynamin 1-like protein.	Serine/threonine-protein phosphatase PGAM5, mitochondrial.	0.939
DNM1L	PINK1	ENSBMUP00000007080	ENSBMUP00000029802	Dynamin 1-like protein.	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily.	0.750
FIS1	BNIP3	ENSBMUP00000007963	ENSBMUP00000017856	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	BCL2/adenovirus E1B 19 kDa protein-interacting protein 3.	0.449
FIS1	DNM1L	ENSBMUP00000007963	ENSBMUP00000007080	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Dynamin 1-like protein.	0.832
FIS1	MFF	ENSBMUP00000007963	ENSBMUP00000018381	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Mitochondrial fission factor.	0.842
FIS1	MIEF2	ENSBMUP00000007963	ENSBMUP00000020702	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Smith-Magenis syndrome chromosomal region candidate 7 protein.	0.507
FIS1	PINK1	ENSBMUP00000007963	ENSBMUP00000029802	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily.	0.645
KDR	DCN	ENSBMUP00000009699	ENSBMUP00000036182	Kinase insert domain protein receptor.	Decorin; May affect the rate of fibrils formation.	0.441
LOC102284329	PINK1	ENSBMUP00000013642	ENSBMUP00000029802	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily.	0.483
MFF	DNM1L	ENSBMUP00000018381	ENSBMUP00000007080	Mitochondrial fission factor.	Dynamin 1-like protein.	0.851
MFF	FIS1	ENSBMUP00000018381	ENSBMUP00000007963	Mitochondrial fission factor.	Mitochondrial fission 1 protein; Involved in the fragmentation of the mitochondrial network and its perinuclear clustering.	0.842