STRINGSTRING
GLB1 GLB1 CTNNBL1 CTNNBL1 TFIP11 TFIP11 CCDC130 CCDC130 DHX38 DHX38 CWC25 CWC25 U2AF2 U2AF2 RBM41 RBM41 SLU7 SLU7 CASC3 CASC3 CRNKL1 CRNKL1 PRPF38B PRPF38B GPKOW GPKOW CWC27 CWC27 PPWD1 PPWD1 GCFC2 GCFC2 WDR25 WDR25 SF3A3 SF3A3 ESS2 ESS2 SNIP1 SNIP1 WBP4 WBP4 LOC102283462 LOC102283462 SF3B6 SF3B6 CWC15 CWC15 EFL1 EFL1 ENSBMUP00000008738 ENSBMUP00000008738 SNRPE SNRPE SF3B5 SF3B5 RBMX RBMX PLRG1 PLRG1 LOC102278219 LOC102278219 DHX16 DHX16 SNRNP40 SNRNP40 DDX41 DDX41 ENSBMUP00000010437 ENSBMUP00000010437 ENSBMUP00000010468 ENSBMUP00000010468 ENSBMUP00000011323 ENSBMUP00000011323 DHX15 DHX15 EFTUD2 EFTUD2 M91_02982 M91_02982 PRPF4B PRPF4B LSM5 LSM5 AAR2 AAR2 PRPF8 PRPF8 CWF19L2 CWF19L2 RNF113A RNF113A UHRF1BP1 UHRF1BP1 ADAR ADAR CWC22 CWC22 CDC5L CDC5L LSM8 LSM8 WDR83 WDR83 SNRNP35 SNRNP35 DDX39B DDX39B SF3A2 SF3A2 RBMX2 RBMX2 MTHFSD MTHFSD SF1 SF1 ISY1 ISY1 SNRPA1 SNRPA1 M91_19371 M91_19371 SRRM2 SRRM2 AQR AQR SNRNP70 SNRNP70 IK IK SYF2 SYF2 LSM4 LSM4 ZMAT2 ZMAT2 PHF5A PHF5A LOC102269563 LOC102269563 LSM3 LSM3 CCDC12 CCDC12 SMU1 SMU1 ENSBMUP00000022920 ENSBMUP00000022920 PRPF38A PRPF38A CDC40 CDC40 ZCCHC8 ZCCHC8 CWF19L1 CWF19L1 SNW1 SNW1 TXNL4A TXNL4A DDX39A DDX39A DHX8 DHX8 SNRPF SNRPF YJU2 YJU2 HNRNPC HNRNPC RBM22 RBM22 LOC102279927 LOC102279927 LUC7L3 LUC7L3 ENSBMUP00000026004 ENSBMUP00000026004 SNRNP48 SNRNP48 GPATCH1 GPATCH1 LOC106701434 LOC106701434 ENSBMUP00000026353 ENSBMUP00000026353 PRPF39 PRPF39 ZCRB1 ZCRB1 MFAP1 MFAP1 PPIL1 PPIL1 ENSBMUP00000027537 ENSBMUP00000027537 ENSBMUP00000027546 ENSBMUP00000027546 SNRPD2 SNRPD2 SNRPG SNRPG UBE2J1 UBE2J1 PRPF40A PRPF40A ENSBMUP00000028715 ENSBMUP00000028715 PTBP2 PTBP2 SNRPG-2 SNRPG-2 ENSBMUP00000029265 ENSBMUP00000029265 SNRPD1 SNRPD1 ENSBMUP00000029555 ENSBMUP00000029555 SRRM1 SRRM1 ENSBMUP00000029573 ENSBMUP00000029573 MYEF2 MYEF2 EIF4A3 EIF4A3 SNRPD3 SNRPD3 PRPF18 PRPF18 SF3B3 SF3B3 DDX23 DDX23 BUD31 BUD31 M91_08377 M91_08377 ENSBMUP00000031237 ENSBMUP00000031237 PPIE PPIE LUC7L LUC7L ENSBMUP00000032774 ENSBMUP00000032774 SNRNP25 SNRNP25 PRPF6 PRPF6 SNRNP200 SNRNP200 ENSBMUP00000034003 ENSBMUP00000034003 ZMAT5 ZMAT5 SF3A1 SF3A1 M91_01297 M91_01297 HNRNPM HNRNPM XAB2 XAB2 RNPC3 RNPC3 ALYREF ALYREF PPIL3 PPIL3 SNRPN SNRPN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GLB1Beta-galactosidase. (653 aa)
CTNNBL1Beta-catenin-like protein 1. (563 aa)
TFIP11Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Intron turnover seems to proceed through reactions in two lariat-intron associated complexes termed Intron Large (IL) and Intron Small (IS). In cooperation with DHX15 seems to mediate the transition of the U2, U5 and U6 snRNP- containing IL complex to the snRNP-free IS complex leading to efficient debranching and turnover of excised introns. May play a role in the differentiation of ameloblasts and odontoblasts or in the forming of the enamel extrac [...] (833 aa)
CCDC130Coiled-coil domain-containing protein 130. (400 aa)
DHX38Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16. (1112 aa)
CWC25Pre-mRNA-splicing factor CWC25-like protein. (425 aa)
U2AF2U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (443 aa)
RBM41RNA-binding protein 41. (413 aa)
SLU7Pre-mRNA-splicing factor SLU7. (586 aa)
CASC3Protein CASC3. (700 aa)
CRNKL1Crooked neck-like protein 1. (671 aa)
PRPF38BPre-mRNA processing factor 38B. (543 aa)
GPKOWG patch domain and KOW motifs-containing protein. (493 aa)
CWC27CWC27 spliceosome associated protein homolog. (473 aa)
PPWD1Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (644 aa)
GCFC2GC-rich sequence DNA-binding factor. (773 aa)
WDR25WD repeat domain 25. (285 aa)
SF3A3Splicing factor 3A subunit 3. (501 aa)
ESS2Protein DGCR14. (478 aa)
SNIP1Smad nuclear-interacting protein 1. (401 aa)
WBP4WW domain-binding protein 4. (359 aa)
LOC102283462Uncharacterized protein. (341 aa)
SF3B6Pre-mRNA branch site protein p14. (125 aa)
CWC15Protein CWC15-like protein. (234 aa)
EFL1Elongation factor Tu GTP-binding domain-containing protein 1. (1129 aa)
ENSBMUP00000008738annotation not available (476 aa)
SNRPESmall nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (92 aa)
SF3B5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
RBMXHeterogeneous nuclear ribonucleoprotein G. (391 aa)
PLRG1Pleiotropic regulator 1. (513 aa)
LOC102278219Small nuclear ribonucleoprotein Sm D1-like. (119 aa)
DHX16Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16. (948 aa)
SNRNP40U5 small nuclear ribonucleoprotein 40 kDa protein. (359 aa)
DDX41Putative ATP-dependent RNA helicase DDX41. (669 aa)
ENSBMUP00000010437annotation not available (125 aa)
ENSBMUP00000010468annotation not available (83 aa)
ENSBMUP00000011323annotation not available (102 aa)
DHX15Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (795 aa)
EFTUD2116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
M91_02982Heterogeneous nuclear ribonucleoprotein G. (80 aa)
PRPF4BSerine/threonine-protein kinase PRP4-like protein. (1000 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
AAR2Uncharacterized protein. (347 aa)
PRPF8Pre-mRNA-processing-splicing factor 8. (2335 aa)
CWF19L2CWF19-like protein 2. (889 aa)
RNF113ARING finger protein 113A. (343 aa)
UHRF1BP1UHRF1-binding protein 1. (1442 aa)
ADARDouble-stranded RNA-specific adenosine deaminase. (1149 aa)
CWC22CWC22 spliceosome associated protein homolog. (898 aa)
CDC5LCell division cycle 5-like protein. (801 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
WDR83WD repeat domain-containing protein 83. (315 aa)
SNRNP35U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (245 aa)
DDX39BSpliceosome RNA helicase BAT1. (428 aa)
SF3A2Splicing factor 3A subunit 2. (477 aa)
RBMX2RNA-binding motif protein, X-linked 2. (328 aa)
MTHFSDMethenyltetrahydrofolate synthase domain-containing protein. (380 aa)
SF1Splicing factor 1. (613 aa)
ISY1Pre-mRNA-splicing factor ISY1-like protein. (284 aa)
SNRPA1U2 small nuclear ribonucleoprotein A. (213 aa)
M91_19371Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. (93 aa)
SRRM2Serine/arginine repetitive matrix protein 2. (309 aa)
AQRRNA helicase aquarius; Intron-binding spliceosomal protein required to link pre-mRNA splicing and snoRNP (small nucleolar ribonucleoprotein) biogenesis. Plays a key role in position-dependent assembly of intron-encoded box C/D small snoRNP, splicing being required for snoRNP assembly. May act by helping the folding of the snoRNA sequence. Binds to intron of pre- mRNAs in a sequence-independent manner, contacting the region between snoRNA and the branchpoint of introns (40 nucleotides upstream of the branchpoint) during the late stages of splicing. (1484 aa)
SNRNP70U1 small nuclear ribonucleoprotein 70 kDa. (189 aa)
IKProtein Red. (567 aa)
SYF2Pre-mRNA-splicing factor SYF2. (245 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (139 aa)
ZMAT2Zinc finger matrin-type protein 2. (199 aa)
PHF5APHD finger-like domain-containing protein 5A. (110 aa)
LOC102269563Putative RNA-binding protein Luc7-like 2. (425 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
CCDC12Coiled-coil domain-containing protein 12. (194 aa)
SMU1WD40 repeat-containing protein SMU1. (513 aa)
ENSBMUP00000022920annotation not available (64 aa)
PRPF38APre-mRNA-splicing factor 38A. (316 aa)
CDC40Pre-mRNA-processing factor 17. (607 aa)
ZCCHC8Zinc finger CCHC domain-containing protein 8. (707 aa)
CWF19L1CWF19-like protein 1. (539 aa)
SNW1SNW domain-containing protein 1. (571 aa)
TXNL4AThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
DDX39AATP-dependent RNA helicase DDX39. (477 aa)
DHX8ATP-dependent RNA helicase DHX8/PRP22. (1206 aa)
SNRPFSmall nuclear ribonucleoprotein F. (86 aa)
YJU2Coiled-coil domain-containing protein 94. (320 aa)
HNRNPCHeterogeneous nuclear ribonucleoprotein C. (307 aa)
RBM22Pre-mRNA-splicing factor RBM22. (420 aa)
LOC102279927Small nuclear ribonucleoprotein Sm D1-like. (119 aa)
LUC7L3LUC7 like 3 pre-mRNA splicing factor. (489 aa)
ENSBMUP00000026004annotation not available (130 aa)
SNRNP48U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (340 aa)
GPATCH1G patch domain-containing protein 1. (861 aa)
LOC106701434Small nuclear ribonucleoprotein F-like. (81 aa)
ENSBMUP00000026353Small nuclear ribonucleoprotein D1. (114 aa)
PRPF39Pre-mRNA-processing factor 39. (667 aa)
ZCRB1Zinc finger CCHC-type and RNA binding motif containing 1. (217 aa)
MFAP1Microfibrillar-associated protein 1. (439 aa)
PPIL1Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (180 aa)
ENSBMUP00000027537annotation not available (51 aa)
ENSBMUP00000027546annotation not available (86 aa)
SNRPD2Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. (118 aa)
SNRPGSmall nuclear ribonucleoprotein polypeptide G. (79 aa)
UBE2J1Ubiquitin-conjugating enzyme E2 J1. (324 aa)
PRPF40APre-mRNA processing factor 40 homolog A. (929 aa)
ENSBMUP00000028715annotation not available (91 aa)
PTBP2Polypyrimidine tract-binding protein 2. (501 aa)
SNRPG-2Small nuclear ribonucleoprotein polypeptide G. (74 aa)
ENSBMUP00000029265annotation not available (87 aa)
SNRPD1Small nuclear ribonucleoprotein Sm D1; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. May act as a charged protein scaffold to promote snRNP assembly or strengthen snRNP-snRNP interactions through non-specific electrostatic contacts with RNA. (119 aa)
ENSBMUP00000029555annotation not available (101 aa)
SRRM1Serine/arginine repetitive matrix protein 1. (888 aa)
ENSBMUP00000029573RNA-binding motif protein, X-linked 2. (207 aa)
MYEF2Myelin expression factor 2. (594 aa)
EIF4A3Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family. (411 aa)
SNRPD3Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. (126 aa)
PRPF18Pre-mRNA-splicing factor 18. (342 aa)
SF3B3Splicing factor 3B subunit 3. (1217 aa)
DDX23Putative ATP-dependent RNA helicase DDX23. (820 aa)
BUD31Protein BUD31-like protein. (168 aa)
M91_08377Uncharacterized protein. (1214 aa)
ENSBMUP00000031237annotation not available (74 aa)
PPIEPeptidyl-prolyl cis-trans isomerase E. (305 aa)
LUC7LPutative RNA-binding protein Luc7-like 1. (272 aa)
ENSBMUP00000032774annotation not available (81 aa)
SNRNP25U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (177 aa)
PRPF6Pre-mRNA-processing factor 6. (941 aa)
SNRNP200U5 small nuclear ribonucleoprotein 200 kDa helicase. (2136 aa)
ENSBMUP00000034003annotation not available (79 aa)
ZMAT5Zinc finger matrin-type protein 5. (170 aa)
SF3A1Splicing factor 3A subunit 1. (793 aa)
M91_01297Small nuclear ribonucleoprotein G; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. (74 aa)
HNRNPMHeterogeneous nuclear ribonucleoprotein M. (730 aa)
XAB2Pre-mRNA-splicing factor SYF1. (855 aa)
RNPC3RNA-binding protein 40. (517 aa)
ALYREFTHO complex subunit 4. (162 aa)
PPIL3Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
SNRPNSmall nuclear ribonucleoprotein-associated protein N. (240 aa)
Your Current Organism:
Bos mutus
NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak
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