(16 nodes) Leucine-rich repeat, cysteine-containing subtype network (Bos mutus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FBXL13	F-box/LRR-repeat protein 13. (734 aa)
	FBXL2	F-box/LRR-repeat protein 2. (408 aa)
	FBXL7	F-box/LRR-repeat protein 7. (444 aa)
	RNH1	Ribonuclease inhibitor. (518 aa)
	FBXL22	F-box/LRR-repeat protein 22. (284 aa)
	FBXL20	F-box/LRR-repeat protein 20. (438 aa)
	FBXL15	F-box only protein 37. (311 aa)
	NLRC5	Protein NLRC5. (1862 aa)
	FBXL4	F-box/LRR-repeat protein 4. (621 aa)
	FBXL19	F-box/LRR-repeat protein 19. (689 aa)
	FBXL6	F-box/LRR-repeat protein 6. (287 aa)
	FBXL16	F-box/LRR-repeat protein 16. (501 aa)
	KDM2A	Lysine-specific demethylase 2A. (1219 aa)
	KDM2B	Lysine-specific demethylase 2B. (1285 aa)
	SKP2	S-phase kinase-associated protein 2. (408 aa)
	FBXL17	F-box/LRR-repeat protein 17. (303 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FBXL16	FBXL6	ENSBMUP00000031934	ENSBMUP00000033020	F-box/LRR-repeat protein 16.	F-box/LRR-repeat protein 6.	0.536
FBXL16	FBXL7	ENSBMUP00000031934	ENSBMUP00000010340	F-box/LRR-repeat protein 16.	F-box/LRR-repeat protein 7.	0.536
FBXL17	SKP2	ENSBMUP00000019078	ENSBMUP00000023783	F-box/LRR-repeat protein 17.	S-phase kinase-associated protein 2.	0.498
FBXL6	FBXL16	ENSBMUP00000033020	ENSBMUP00000031934	F-box/LRR-repeat protein 6.	F-box/LRR-repeat protein 16.	0.536
FBXL7	FBXL16	ENSBMUP00000010340	ENSBMUP00000031934	F-box/LRR-repeat protein 7.	F-box/LRR-repeat protein 16.	0.536
KDM2A	SKP2	ENSBMUP00000028430	ENSBMUP00000023783	Lysine-specific demethylase 2A.	S-phase kinase-associated protein 2.	0.407
SKP2	FBXL17	ENSBMUP00000023783	ENSBMUP00000019078	S-phase kinase-associated protein 2.	F-box/LRR-repeat protein 17.	0.498
SKP2	KDM2A	ENSBMUP00000023783	ENSBMUP00000028430	S-phase kinase-associated protein 2.	Lysine-specific demethylase 2A.	0.407