(8 nodes) Ubiquitin conserved site network (Bos mutus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UBB	Polyubiquitin-C. (191 aa)
	UBA52	Ubiquitin-60S ribosomal protein L40. (128 aa)
	UBC	Polyubiquitin-C. (305 aa)
	UBL4A	Ubiquitin-like protein 4A. (176 aa)
	USP14	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (494 aa)
	UBL4B	Ubiquitin-like protein 4B. (165 aa)
	FAU	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	BAG6	Large proline-rich protein BAT3. (1164 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAG6	FAU	ENSBMUP00000018518	ENSBMUP00000004217	Large proline-rich protein BAT3.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.500
BAG6	UBB	ENSBMUP00000018518	ENSBMUP00000018689	Large proline-rich protein BAT3.	Polyubiquitin-C.	0.452
BAG6	UBC	ENSBMUP00000018518	ENSBMUP00000024192	Large proline-rich protein BAT3.	Polyubiquitin-C.	0.452
BAG6	UBL4A	ENSBMUP00000018518	ENSBMUP00000036233	Large proline-rich protein BAT3.	Ubiquitin-like protein 4A.	0.877
BAG6	UBL4B	ENSBMUP00000018518	ENSBMUP00000003820	Large proline-rich protein BAT3.	Ubiquitin-like protein 4B.	0.815
FAU	BAG6	ENSBMUP00000004217	ENSBMUP00000018518	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Large proline-rich protein BAT3.	0.500
FAU	UBA52	ENSBMUP00000004217	ENSBMUP00000020581	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-60S ribosomal protein L40.	0.999
FAU	UBB	ENSBMUP00000004217	ENSBMUP00000018689	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Polyubiquitin-C.	0.457
FAU	UBC	ENSBMUP00000004217	ENSBMUP00000024192	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Polyubiquitin-C.	0.457
FAU	UBL4A	ENSBMUP00000004217	ENSBMUP00000036233	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like protein 4A.	0.457
FAU	UBL4B	ENSBMUP00000004217	ENSBMUP00000003820	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like protein 4B.	0.457
FAU	USP14	ENSBMUP00000004217	ENSBMUP00000029784	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.530
UBA52	FAU	ENSBMUP00000020581	ENSBMUP00000004217	Ubiquitin-60S ribosomal protein L40.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
UBA52	UBB	ENSBMUP00000020581	ENSBMUP00000018689	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-C.	0.999
UBA52	UBC	ENSBMUP00000020581	ENSBMUP00000024192	Ubiquitin-60S ribosomal protein L40.	Polyubiquitin-C.	0.999
UBA52	UBL4A	ENSBMUP00000020581	ENSBMUP00000036233	Ubiquitin-60S ribosomal protein L40.	Ubiquitin-like protein 4A.	0.748
UBA52	UBL4B	ENSBMUP00000020581	ENSBMUP00000003820	Ubiquitin-60S ribosomal protein L40.	Ubiquitin-like protein 4B.	0.748
UBA52	USP14	ENSBMUP00000020581	ENSBMUP00000029784	Ubiquitin-60S ribosomal protein L40.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.931
UBB	BAG6	ENSBMUP00000018689	ENSBMUP00000018518	Polyubiquitin-C.	Large proline-rich protein BAT3.	0.452
UBB	FAU	ENSBMUP00000018689	ENSBMUP00000004217	Polyubiquitin-C.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.457