30 items (Bos mutus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SQSTM1	Sequestosome-1. (356 aa)
	TOMM40L	Translocase of outer mitochondrial membrane 40 like. (308 aa)
	TOMM20L	TOMM20-like protein 1. (142 aa)
	MTERF3	mTERF domain-containing protein 1, mitochondrial. (417 aa)
	TOMM5	Translocase of outer mitochondrial membrane 5. (51 aa)
	VDAC1	Voltage-dependent anion-selective channel protein 1. (283 aa)
	TOMM20	Mitochondrial import receptor subunit TOM20-like protein. (145 aa)
	LOC102284805	RBR-type E3 ubiquitin transferase. (176 aa)
	MAP1LC3A	Microtubule-associated proteins 1A/1B light chain 3A. (131 aa)
	ENSBMUP00000011108	annotation not available (102 aa)
	TOMM70	Mitochondrial import receptor subunit TOM70. (609 aa)
	LOC102270304	E3 ubiquitin-protein ligase parkin. (279 aa)
	MFN2	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (757 aa)
	ENSBMUP00000017506	annotation not available (141 aa)
	M91_08305	Microtubule-associated proteins 1A/1B light chain 3B. (184 aa)
	UBB	Polyubiquitin-C. (191 aa)
	ENSBMUP00000018701	annotation not available (117 aa)
	ATG12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (145 aa)
	UBA52	Ubiquitin-60S ribosomal protein L40. (128 aa)
	MFN1	Mitofusin-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (742 aa)
	UBC	Polyubiquitin-C. (305 aa)
	LOC102272337	Mitochondrial import receptor subunit TOM6-like protein. (74 aa)
	TOMM40	Mitochondrial import receptor subunit TOM40-like protein. (361 aa)
	ENSBMUP00000028746	annotation not available (97 aa)
	TOMM7	Mitochondrial import receptor subunit TOM7-like protein. (55 aa)
	PINK1	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily. (468 aa)
	ENSBMUP00000030625	annotation not available (81 aa)
	ATG5	Autophagy protein 5; Involved in autophagic vesicle formation. (350 aa)
	LOC102272461	Microtubule-associated proteins 1A/1B light chain 3B. (125 aa)
	TOMM22	Translocase of outer mitochondrial membrane 22. (181 aa)

Your Current Organism:

Bos mutus

NCBI taxonomy Id: 72004
Other names: B. mutus, Bos grunniens mutus, Poephagus mutus, wild yak

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG12	ATG5	ENSBMUP00000019328	ENSBMUP00000030974	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
ATG12	ENSBMUP00000018701	ENSBMUP00000019328	ENSBMUP00000018701	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.716
ATG12	ENSBMUP00000028746	ENSBMUP00000019328	ENSBMUP00000028746	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	annotation not available	0.576
ATG12	LOC102272461	ENSBMUP00000019328	ENSBMUP00000033315	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated proteins 1A/1B light chain 3B.	0.800
ATG12	M91_08305	ENSBMUP00000019328	ENSBMUP00000018311	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated proteins 1A/1B light chain 3B.	0.800
ATG12	MAP1LC3A	ENSBMUP00000019328	ENSBMUP00000006821	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated proteins 1A/1B light chain 3A.	0.779
ATG12	MFN1	ENSBMUP00000019328	ENSBMUP00000022212	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin-1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.630
ATG12	MFN2	ENSBMUP00000019328	ENSBMUP00000017134	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin-2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.630
ATG12	PINK1	ENSBMUP00000019328	ENSBMUP00000029802	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Serine/threonine-protein kinase PINK1, mitochondrial; Belongs to the protein kinase superfamily.	0.493
ATG12	SQSTM1	ENSBMUP00000019328	ENSBMUP00000019716	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Sequestosome-1.	0.770
ATG12	VDAC1	ENSBMUP00000019328	ENSBMUP00000002865	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Voltage-dependent anion-selective channel protein 1.	0.577
ATG5	ATG12	ENSBMUP00000030974	ENSBMUP00000019328	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999
ATG5	ENSBMUP00000018701	ENSBMUP00000030974	ENSBMUP00000018701	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.778
ATG5	ENSBMUP00000028746	ENSBMUP00000030974	ENSBMUP00000028746	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.596
ATG5	ENSBMUP00000030625	ENSBMUP00000030974	ENSBMUP00000030625	Autophagy protein 5; Involved in autophagic vesicle formation.	annotation not available	0.442
ATG5	LOC102270304	ENSBMUP00000030974	ENSBMUP00000012604	Autophagy protein 5; Involved in autophagic vesicle formation.	E3 ubiquitin-protein ligase parkin.	0.442
ATG5	LOC102272461	ENSBMUP00000030974	ENSBMUP00000033315	Autophagy protein 5; Involved in autophagic vesicle formation.	Microtubule-associated proteins 1A/1B light chain 3B.	0.789
ATG5	LOC102284805	ENSBMUP00000030974	ENSBMUP00000004285	Autophagy protein 5; Involved in autophagic vesicle formation.	RBR-type E3 ubiquitin transferase.	0.442
ATG5	M91_08305	ENSBMUP00000030974	ENSBMUP00000018311	Autophagy protein 5; Involved in autophagic vesicle formation.	Microtubule-associated proteins 1A/1B light chain 3B.	0.789
ATG5	MAP1LC3A	ENSBMUP00000030974	ENSBMUP00000006821	Autophagy protein 5; Involved in autophagic vesicle formation.	Microtubule-associated proteins 1A/1B light chain 3A.	0.789