(6 nodes) mRNA cleavage stimulating factor complex, and Polyribonucleotide 5-hydroxyl-kinase Clp1/Grc3 network (Drosophila ananassae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DanaGF19444	Suf domain-containing protein. (733 aa)
	DanaGF16912	RRM domain-containing protein. (415 aa)
	DanaGF12082	Uncharacterized protein, isoform D. (1882 aa)
	cbc	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (425 aa)
	DanaGF20966	Uncharacterized protein, isoform A. (1376 aa)
	DanaGF23256	WD_REPEATS_REGION domain-containing protein. (424 aa)

Your Current Organism:

Drosophila ananassae

NCBI taxonomy Id: 7217
Other names: D. ananassae, Drosophila annanassae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DanaGF12082	DanaGF16912	B3MC78	B3LW79	Uncharacterized protein, isoform D.	RRM domain-containing protein.	0.992
DanaGF12082	DanaGF19444	B3MC78	A0A0P8XS09	Uncharacterized protein, isoform D.	Suf domain-containing protein.	0.996
DanaGF12082	DanaGF20966	B3MC78	B3MRN3	Uncharacterized protein, isoform D.	Uncharacterized protein, isoform A.	0.909
DanaGF12082	DanaGF23256	B3MC78	B3MSY0	Uncharacterized protein, isoform D.	WD_REPEATS_REGION domain-containing protein.	0.856
DanaGF12082	cbc	B3MC78	B3MGZ0	Uncharacterized protein, isoform D.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.998
DanaGF16912	DanaGF12082	B3LW79	B3MC78	RRM domain-containing protein.	Uncharacterized protein, isoform D.	0.992
DanaGF16912	DanaGF19444	B3LW79	A0A0P8XS09	RRM domain-containing protein.	Suf domain-containing protein.	0.998
DanaGF16912	DanaGF20966	B3LW79	B3MRN3	RRM domain-containing protein.	Uncharacterized protein, isoform A.	0.951
DanaGF16912	DanaGF23256	B3LW79	B3MSY0	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
DanaGF16912	cbc	B3LW79	B3MGZ0	RRM domain-containing protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.988
DanaGF19444	DanaGF12082	A0A0P8XS09	B3MC78	Suf domain-containing protein.	Uncharacterized protein, isoform D.	0.996
DanaGF19444	DanaGF16912	A0A0P8XS09	B3LW79	Suf domain-containing protein.	RRM domain-containing protein.	0.998
DanaGF19444	DanaGF20966	A0A0P8XS09	B3MRN3	Suf domain-containing protein.	Uncharacterized protein, isoform A.	0.961
DanaGF19444	DanaGF23256	A0A0P8XS09	B3MSY0	Suf domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.994
DanaGF19444	cbc	A0A0P8XS09	B3MGZ0	Suf domain-containing protein.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.948
DanaGF20966	DanaGF12082	B3MRN3	B3MC78	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform D.	0.909
DanaGF20966	DanaGF16912	B3MRN3	B3LW79	Uncharacterized protein, isoform A.	RRM domain-containing protein.	0.951
DanaGF20966	DanaGF19444	B3MRN3	A0A0P8XS09	Uncharacterized protein, isoform A.	Suf domain-containing protein.	0.961
DanaGF20966	DanaGF23256	B3MRN3	B3MSY0	Uncharacterized protein, isoform A.	WD_REPEATS_REGION domain-containing protein.	0.959
DanaGF20966	cbc	B3MRN3	B3MGZ0	Uncharacterized protein, isoform A.	Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily.	0.912