(7 nodes) Mixed, incl. Ribosomal protein S28e, and Ribosomal protein L4/L1e network (Drosophila ananassae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DanaGF17433	40S ribosomal protein S27. (84 aa)
	DanaGF16244	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (246 aa)
	DanaGF18256	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (117 aa)
	DanaGF18868	Ribos_L4_asso_C domain-containing protein. (401 aa)
	DanaGF25156	Uncharacterized protein. (131 aa)
	RpS21	40S ribosomal protein S21; May be an associated component of the ribosome rather than a core structural subunit. May act as a translation initiation factor. Has a role in regulation of cell proliferation in the hematopoietic organs and the imaginal disks of larva (By similarity). (83 aa)
	DanaGF21783	Uncharacterized protein. (65 aa)

Your Current Organism:

Drosophila ananassae

NCBI taxonomy Id: 7217
Other names: D. ananassae, Drosophila annanassae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DanaGF16244	DanaGF17433	B3LYA1	B3LWJ2	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S27.	0.999
DanaGF16244	DanaGF18256	B3LYA1	B3LZ60	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
DanaGF16244	DanaGF18868	B3LYA1	B3M017	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	Ribos_L4_asso_C domain-containing protein.	0.999
DanaGF16244	DanaGF21783	B3LYA1	B3N069	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	Uncharacterized protein.	0.999
DanaGF16244	DanaGF25156	B3LYA1	B3MAQ7	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	Uncharacterized protein.	0.999
DanaGF16244	RpS21	B3LYA1	B3MLA8	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	40S ribosomal protein S21; May be an associated component of the ribosome rather than a core structural subunit. May act as a translation initiation factor. Has a role in regulation of cell proliferation in the hematopoietic organs and the imaginal disks of larva (By similarity).	0.999
DanaGF17433	DanaGF16244	B3LWJ2	B3LYA1	40S ribosomal protein S27.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
DanaGF17433	DanaGF18256	B3LWJ2	B3LZ60	40S ribosomal protein S27.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
DanaGF17433	DanaGF18868	B3LWJ2	B3M017	40S ribosomal protein S27.	Ribos_L4_asso_C domain-containing protein.	0.999
DanaGF17433	DanaGF21783	B3LWJ2	B3N069	40S ribosomal protein S27.	Uncharacterized protein.	0.999
DanaGF17433	DanaGF25156	B3LWJ2	B3MAQ7	40S ribosomal protein S27.	Uncharacterized protein.	0.999
DanaGF17433	RpS21	B3LWJ2	B3MLA8	40S ribosomal protein S27.	40S ribosomal protein S21; May be an associated component of the ribosome rather than a core structural subunit. May act as a translation initiation factor. Has a role in regulation of cell proliferation in the hematopoietic organs and the imaginal disks of larva (By similarity).	0.999
DanaGF18256	DanaGF16244	B3LZ60	B3LYA1	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
DanaGF18256	DanaGF17433	B3LZ60	B3LWJ2	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein S27.	0.999
DanaGF18256	DanaGF18868	B3LZ60	B3M017	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Ribos_L4_asso_C domain-containing protein.	0.999
DanaGF18256	DanaGF21783	B3LZ60	B3N069	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein.	0.999
DanaGF18256	DanaGF25156	B3LZ60	B3MAQ7	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	Uncharacterized protein.	0.999
DanaGF18256	RpS21	B3LZ60	B3MLA8	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	40S ribosomal protein S21; May be an associated component of the ribosome rather than a core structural subunit. May act as a translation initiation factor. Has a role in regulation of cell proliferation in the hematopoietic organs and the imaginal disks of larva (By similarity).	0.999
DanaGF18868	DanaGF16244	B3M017	B3LYA1	Ribos_L4_asso_C domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
DanaGF18868	DanaGF17433	B3M017	B3LWJ2	Ribos_L4_asso_C domain-containing protein.	40S ribosomal protein S27.	0.999