(7 nodes) Extracellular matrix constituent secretion network (Drosophila ananassae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DanaGF22300	Uncharacterized protein, isoform A. (1660 aa)
	DanaGF14634	Uncharacterized protein. (122 aa)
	DanaGF12252	Polypeptide N-acetylgalactosaminyltransferase. (667 aa)
	DanaGF10843	Uncharacterized protein. (207 aa)
	DanaGF18564	SPARC_Ca_bdg domain-containing protein. (303 aa)
	DanaGF13432	Uncharacterized protein, isoform B. (1166 aa)
	DanaGF20241	Uncharacterized protein. (204 aa)

Your Current Organism:

Drosophila ananassae

NCBI taxonomy Id: 7217
Other names: D. ananassae, Drosophila annanassae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DanaGF10843	DanaGF13432	B3M8T8	A0A0P8Y5M2	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.807
DanaGF10843	DanaGF14634	B3M8T8	B3MPG1	Uncharacterized protein.	Uncharacterized protein.	0.803
DanaGF10843	DanaGF22300	B3M8T8	B3MW95	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.495
DanaGF13432	DanaGF10843	A0A0P8Y5M2	B3M8T8	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.807
DanaGF13432	DanaGF20241	A0A0P8Y5M2	B3MQI0	Uncharacterized protein, isoform B.	Uncharacterized protein.	0.923
DanaGF14634	DanaGF10843	B3MPG1	B3M8T8	Uncharacterized protein.	Uncharacterized protein.	0.803
DanaGF14634	DanaGF20241	B3MPG1	B3MQI0	Uncharacterized protein.	Uncharacterized protein.	0.790
DanaGF20241	DanaGF13432	B3MQI0	A0A0P8Y5M2	Uncharacterized protein.	Uncharacterized protein, isoform B.	0.923
DanaGF20241	DanaGF14634	B3MQI0	B3MPG1	Uncharacterized protein.	Uncharacterized protein.	0.790
DanaGF20241	DanaGF22300	B3MQI0	B3MW95	Uncharacterized protein.	Uncharacterized protein, isoform A.	0.528
DanaGF22300	DanaGF10843	B3MW95	B3M8T8	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.495
DanaGF22300	DanaGF20241	B3MW95	B3MQI0	Uncharacterized protein, isoform A.	Uncharacterized protein.	0.528