(10 nodes) Metallo-beta-lactamase network (Drosophila ananassae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DanaGF18101	Uncharacterized protein. (684 aa)
	DanaGF16269	Cleavage and polyadenylation specificity factor subunit 2. (756 aa)
	DanaGF10658	Beta-Casp domain-containing protein. (682 aa)
	DanaGF12130	Lactamase_B domain-containing protein. (768 aa)
	DanaGF15411	Lactamase_B domain-containing protein. (225 aa)
	DanaGF15132	Uncharacterized protein, isoform A. (292 aa)
	DanaGF23370	Uncharacterized protein. (597 aa)
	DanaGF11594	Lactamase_B domain-containing protein. (752 aa)
	DanaGF10361	Uncharacterized protein, isoform D. (343 aa)
	DanaGF27496	Lactamase_B domain-containing protein. (280 aa)

Your Current Organism:

Drosophila ananassae

NCBI taxonomy Id: 7217
Other names: D. ananassae, Drosophila annanassae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DanaGF10658	DanaGF12130	B3M623	B3MBG7	Beta-Casp domain-containing protein.	Lactamase_B domain-containing protein.	0.594
DanaGF10658	DanaGF23370	B3M623	B3MTI3	Beta-Casp domain-containing protein.	Uncharacterized protein.	0.999
DanaGF11594	DanaGF12130	B3MX61	B3MBG7	Lactamase_B domain-containing protein.	Lactamase_B domain-containing protein.	0.514
DanaGF11594	DanaGF16269	B3MX61	B3LXN9	Lactamase_B domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.495
DanaGF11594	DanaGF18101	B3MX61	B3LW78	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.600
DanaGF12130	DanaGF10658	B3MBG7	B3M623	Lactamase_B domain-containing protein.	Beta-Casp domain-containing protein.	0.594
DanaGF12130	DanaGF11594	B3MBG7	B3MX61	Lactamase_B domain-containing protein.	Lactamase_B domain-containing protein.	0.514
DanaGF12130	DanaGF18101	B3MBG7	B3LW78	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.502
DanaGF16269	DanaGF11594	B3LXN9	B3MX61	Cleavage and polyadenylation specificity factor subunit 2.	Lactamase_B domain-containing protein.	0.495
DanaGF16269	DanaGF18101	B3LXN9	B3LW78	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999
DanaGF16269	DanaGF23370	B3LXN9	B3MTI3	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.938
DanaGF18101	DanaGF11594	B3LW78	B3MX61	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.600
DanaGF18101	DanaGF12130	B3LW78	B3MBG7	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.502
DanaGF18101	DanaGF16269	B3LW78	B3LXN9	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
DanaGF23370	DanaGF10658	B3MTI3	B3M623	Uncharacterized protein.	Beta-Casp domain-containing protein.	0.999
DanaGF23370	DanaGF16269	B3MTI3	B3LXN9	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.938