(11 nodes) Toll/interleukin-1 receptor homology (TIR) domain superfamily network (Drosophila ananassae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DanaGF24145	Uncharacterized protein, isoform A. (896 aa)
	DanaGF23692	TIR domain-containing protein. (1355 aa)
	DanaGF20151	TIR domain-containing protein. (620 aa)
	DanaGF23251	Uncharacterized protein, isoform A. (798 aa)
	DanaGF11739	TIR domain-containing protein; Belongs to the Toll-like receptor family. (1455 aa)
	DanaGF11743	TIR domain-containing protein; Belongs to the Toll-like receptor family. (1384 aa)
	DanaGF23695	TIR domain-containing protein. (1524 aa)
	DanaGF16456	TIR domain-containing protein; Belongs to the Toll-like receptor family. (1098 aa)
	DanaGF13086	TIR domain-containing protein. (537 aa)
	DanaGF17820	TIR domain-containing protein. (644 aa)
	DanaGF23954	Uncharacterized protein, isoform F. (1748 aa)

Your Current Organism:

Drosophila ananassae

NCBI taxonomy Id: 7217
Other names: D. ananassae, Drosophila annanassae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DanaGF11739	DanaGF13086	B3MH72	B3MFK8	TIR domain-containing protein; Belongs to the Toll-like receptor family.	TIR domain-containing protein.	0.815
DanaGF11739	DanaGF23695	B3MH72	B3M720	TIR domain-containing protein; Belongs to the Toll-like receptor family.	TIR domain-containing protein.	0.404
DanaGF11739	DanaGF23954	B3MH72	A0A0P9AL23	TIR domain-containing protein; Belongs to the Toll-like receptor family.	Uncharacterized protein, isoform F.	0.537
DanaGF11739	DanaGF24145	B3MH72	B3M980	TIR domain-containing protein; Belongs to the Toll-like receptor family.	Uncharacterized protein, isoform A.	0.602
DanaGF11743	DanaGF13086	B3MGT5	B3MFK8	TIR domain-containing protein; Belongs to the Toll-like receptor family.	TIR domain-containing protein.	0.736
DanaGF11743	DanaGF23954	B3MGT5	A0A0P9AL23	TIR domain-containing protein; Belongs to the Toll-like receptor family.	Uncharacterized protein, isoform F.	0.534
DanaGF13086	DanaGF11739	B3MFK8	B3MH72	TIR domain-containing protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.815
DanaGF13086	DanaGF11743	B3MFK8	B3MGT5	TIR domain-containing protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.736
DanaGF13086	DanaGF16456	B3MFK8	B3M3C1	TIR domain-containing protein.	TIR domain-containing protein; Belongs to the Toll-like receptor family.	0.996
DanaGF13086	DanaGF20151	B3MFK8	B3N2E6	TIR domain-containing protein.	TIR domain-containing protein.	0.494
DanaGF13086	DanaGF23251	B3MFK8	B3MVB3	TIR domain-containing protein.	Uncharacterized protein, isoform A.	0.601
DanaGF13086	DanaGF23692	B3MFK8	B3M724	TIR domain-containing protein.	TIR domain-containing protein.	0.729
DanaGF13086	DanaGF23695	B3MFK8	B3M720	TIR domain-containing protein.	TIR domain-containing protein.	0.729
DanaGF13086	DanaGF23954	B3MFK8	A0A0P9AL23	TIR domain-containing protein.	Uncharacterized protein, isoform F.	0.906
DanaGF13086	DanaGF24145	B3MFK8	B3M980	TIR domain-containing protein.	Uncharacterized protein, isoform A.	0.764
DanaGF16456	DanaGF13086	B3M3C1	B3MFK8	TIR domain-containing protein; Belongs to the Toll-like receptor family.	TIR domain-containing protein.	0.996
DanaGF16456	DanaGF23251	B3M3C1	B3MVB3	TIR domain-containing protein; Belongs to the Toll-like receptor family.	Uncharacterized protein, isoform A.	0.548
DanaGF17820	DanaGF24145	B3M0U1	B3M980	TIR domain-containing protein.	Uncharacterized protein, isoform A.	0.491
DanaGF20151	DanaGF13086	B3N2E6	B3MFK8	TIR domain-containing protein.	TIR domain-containing protein.	0.494
DanaGF23251	DanaGF13086	B3MVB3	B3MFK8	Uncharacterized protein, isoform A.	TIR domain-containing protein.	0.601