21 items (Drosophila grimshawi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DgriGH14624	GH14624. (157 aa)
	DgriGH15401	GH15401. (110 aa)
	DgriGH20839	GH20839. (122 aa)
	DgriGH19957	GH19957. (221 aa)
	DgriGH22069	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (507 aa)
	DgriGH11408	GH11408. (212 aa)
	DgriGH10975	GH10975. (143 aa)
	DgriGH18363	GH18363. (124 aa)
	DgriGH19282	GH19282. (174 aa)
	DgriGH19042	GH19042. (104 aa)
	DgriGH12519	GH12519. (132 aa)
	DgriGH13036	GH13036. (192 aa)
	DgriGH17643	GH17643. (142 aa)
	DgriGH23015	GH23015. (138 aa)
	DgriGH23016	GH23016. (135 aa)
	DgriGH22760	GH22760. (132 aa)
	DgriGH22758	GH22758. (132 aa)
	DgriGH23020	GH23020. (135 aa)
	DgriGH17928	GH17928. (123 aa)
	DgriGH17929	GH17929. (161 aa)
	DgriGH17930	GH17930. (148 aa)

Your Current Organism:

Drosophila grimshawi

NCBI taxonomy Id: 7222
Other names: D. grimshawi, Idiomyia grimshawi

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DgriGH10975	DgriGH12519	B4JBL9	B4JJP2	GH10975.	GH12519.	0.598
DgriGH10975	DgriGH15401	B4JBL9	B4J333	GH10975.	GH15401.	0.507
DgriGH10975	DgriGH17643	B4JBL9	B4JSR4	GH10975.	GH17643.	0.435
DgriGH10975	DgriGH17928	B4JBL9	B4JXD1	GH10975.	GH17928.	0.588
DgriGH10975	DgriGH19042	B4JBL9	B4JI68	GH10975.	GH19042.	0.483
DgriGH10975	DgriGH19282	B4JBL9	B4JFA9	GH10975.	GH19282.	0.535
DgriGH11408	DgriGH12519	B4JA78	B4JJP2	GH11408.	GH12519.	0.744
DgriGH11408	DgriGH15401	B4JA78	B4J333	GH11408.	GH15401.	0.500
DgriGH11408	DgriGH17643	B4JA78	B4JSR4	GH11408.	GH17643.	0.741
DgriGH11408	DgriGH17928	B4JA78	B4JXD1	GH11408.	GH17928.	0.762
DgriGH11408	DgriGH19282	B4JA78	B4JFA9	GH11408.	GH19282.	0.698
DgriGH11408	DgriGH22069	B4JA78	B4J9Y4	GH11408.	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	0.727
DgriGH12519	DgriGH10975	B4JJP2	B4JBL9	GH12519.	GH10975.	0.598
DgriGH12519	DgriGH11408	B4JJP2	B4JA78	GH12519.	GH11408.	0.744
DgriGH12519	DgriGH13036	B4JJP2	B4JR87	GH12519.	GH13036.	0.424
DgriGH12519	DgriGH15401	B4JJP2	B4J333	GH12519.	GH15401.	0.455
DgriGH12519	DgriGH17643	B4JJP2	B4JSR4	GH12519.	GH17643.	0.878
DgriGH12519	DgriGH17928	B4JJP2	B4JXD1	GH12519.	GH17928.	0.777
DgriGH12519	DgriGH18363	B4JJP2	B4JEX6	GH12519.	GH18363.	0.907
DgriGH12519	DgriGH22069	B4JJP2	B4J9Y4	GH12519.	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	0.691