20 items (Drosophila grimshawi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DgriGH14641	GH14641. (415 aa)
	DgriGH23512	GH23512. (103 aa)
	DgriGH25222	GH25222. (615 aa)
	DgriGH25200	GH25200. (232 aa)
	DgriGH15190	GH15190. (357 aa)
	DgriGH21615	GH21615. (760 aa)
	DgriGH13671	GH13671. (156 aa)
	DgriGH12544	GH12544. (151 aa)
	DgriGH18468	GH18468. (235 aa)
	DgriGH18811	GH18811; Belongs to the RNR ribonuclease family. (979 aa)
	DgriGH19240	GH19240. (911 aa)
	DgriGH11247	GH11247. (299 aa)
	DgriGH10637	GH10637. (249 aa)
	DgriGH10967	GH10967. (214 aa)
	DgriGH22060	GH22060. (296 aa)
	DgriGH20673	GH20673. (300 aa)
	DgriGH21766	GH21766. (671 aa)
	DgriGH16904	GH16904. (331 aa)
	DgriGH16899	GH16899. (1713 aa)
	DgriGH16159	GH16159. (359 aa)

Your Current Organism:

Drosophila grimshawi

NCBI taxonomy Id: 7222
Other names: D. grimshawi, Idiomyia grimshawi

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DgriGH10637	DgriGH10967	B4JCT4	B4JBD7	GH10637.	GH10967.	0.999
DgriGH10637	DgriGH12544	B4JCT4	B4JJU9	GH10637.	GH12544.	0.984
DgriGH10637	DgriGH13671	B4JCT4	B4JQC2	GH10637.	GH13671.	0.967
DgriGH10637	DgriGH14641	B4JCT4	B4IXZ8	GH10637.	GH14641.	0.998
DgriGH10637	DgriGH16899	B4JCT4	B4IXM5	GH10637.	GH16899.	0.973
DgriGH10637	DgriGH16904	B4JCT4	B4IXN7	GH10637.	GH16904.	0.998
DgriGH10637	DgriGH18468	B4JCT4	B4JIK0	GH10637.	GH18468.	0.999
DgriGH10637	DgriGH18811	B4JCT4	B4JFX3	GH10637.	GH18811; Belongs to the RNR ribonuclease family.	0.979
DgriGH10637	DgriGH19240	B4JCT4	B4JF39	GH10637.	GH19240.	0.998
DgriGH10637	DgriGH20673	B4JCT4	B4J751	GH10637.	GH20673.	0.999
DgriGH10637	DgriGH21615	B4JCT4	B4JRX5	GH10637.	GH21615.	0.578
DgriGH10637	DgriGH22060	B4JCT4	B4J9X0	GH10637.	GH22060.	0.999
DgriGH10637	DgriGH23512	B4JCT4	B4K1N2	GH10637.	GH23512.	0.578
DgriGH10637	DgriGH25200	B4JCT4	B4JZ82	GH10637.	GH25200.	0.752
DgriGH10967	DgriGH10637	B4JBD7	B4JCT4	GH10967.	GH10637.	0.999
DgriGH10967	DgriGH12544	B4JBD7	B4JJU9	GH10967.	GH12544.	0.998
DgriGH10967	DgriGH13671	B4JBD7	B4JQC2	GH10967.	GH13671.	0.984
DgriGH10967	DgriGH14641	B4JBD7	B4IXZ8	GH10967.	GH14641.	0.998
DgriGH10967	DgriGH16899	B4JBD7	B4IXM5	GH10967.	GH16899.	0.998
DgriGH10967	DgriGH16904	B4JBD7	B4IXN7	GH10967.	GH16904.	0.997