58 items (Drosophila grimshawi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DgriGH19595	GH19595; Belongs to the WD repeat SEC13 family. (353 aa)
	DgriGH18990	Nuclear pore protein. (797 aa)
	DgriGH19297	GH19297. (434 aa)
	DgriGH18341	GH18341. (354 aa)
	DgriGH11309	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (890 aa)
	DgriGH10764	GH10764. (1405 aa)
	DgriGH10295	GH10295; Belongs to the intermediate filament family. (625 aa)
	DgriGH21467	GH21467. (1879 aa)
	DgriGH21358	GH21358. (294 aa)
	DgriGH19887	GH19887. (224 aa)
	DgriGH19959	GH19959. (1851 aa)
	DgriGH19964	GH19964. (394 aa)
	DgriGH19981	GH19981. (1115 aa)
	DgriGH21906	GH21906. (599 aa)
	DgriGH21895	GH21895; Belongs to the WD repeat SEC13 family. (349 aa)
	DgriGH21847	GH21847. (2380 aa)
	DgriGH21193	GH21193. (595 aa)
	DgriGH21715	GH21715. (668 aa)
	DgriGH21120	GH21120; Belongs to the intermediate filament family. (623 aa)
	DgriGH20225	GH20225. (468 aa)
	DgriGH20846	Nuclear pore complex protein Nup75; Functions as a component of the nuclear pore complex (NPC). (679 aa)
	DgriGH20918	GH20918. (1744 aa)
	DgriGH22089	GH22089; Belongs to the cyclin family. (568 aa)
	DgriGH14952	GH14952. (130 aa)
	DgriGH17550	GH17550. (570 aa)
	DgriGH25288	GH25288. (566 aa)
	DgriGH10075	GH10075. (93 aa)
	DgriGH13933	GH13933. (169 aa)
	DgriGH23859	GH23859. (177 aa)
	DgriGH24958	GH24958. (562 aa)
	DgriGH17968	GH17968; Belongs to the cyclin family. (575 aa)
	DgriGH17674	Nuclear pore protein. (845 aa)
	DgriGH23041	GH23041. (347 aa)
	DgriGH22650	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (681 aa)
	DgriGH17354	GH17354. (334 aa)
	DgriGH16367	GH16367; Belongs to the cyclin family. (589 aa)
	DgriGH13245	GH13245. (578 aa)
	DgriGH10992	GH10992. (1979 aa)
	DgriGH14857	GH14857. (566 aa)
	DgriGH22584	GH22584. (2827 aa)
	DgriGH19208	GH19208. (1195 aa)
	DgriGH19600	GH19600. (701 aa)
	DgriGH13061	GH13061. (370 aa)
	DgriGH13295	GH13295. (1341 aa)
	DgriGH13591	GH13591; Belongs to the cyclin family. (641 aa)
	DgriGH13472	GH13472. (579 aa)
	DgriGH13856	GH13856; Belongs to the protein kinase superfamily. (298 aa)
	DgriGH24705	GH24705; Belongs to the cyclin family. (396 aa)
	DgriGH24291	GH24291. (165 aa)
	DgriGH24292	GH24292. (165 aa)
	DgriGH24293	GH24293. (166 aa)
	DgriGH24294	GH24294; Belongs to the cyclin family. (494 aa)
	DgriGH24566	GH24566. (207 aa)
	DgriGH24436	GH24436. (2037 aa)
	DgriGH12888	GH12888. (243 aa)
	DgriGH11853	GH11853. (445 aa)
	DgriGH11910	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (340 aa)
	DgriGH12898	GH12898. (1416 aa)

Your Current Organism:

Drosophila grimshawi

NCBI taxonomy Id: 7222
Other names: D. grimshawi, Idiomyia grimshawi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DgriGH10075	DgriGH10764	B4K3G9	B4JBD6	GH10075.	GH10764.	0.519
DgriGH10075	DgriGH10992	B4K3G9	B4JTA2	GH10075.	GH10992.	0.697
DgriGH10075	DgriGH11309	B4K3G9	B4JE54	GH10075.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.791
DgriGH10075	DgriGH11853	B4K3G9	B4JLL0	GH10075.	GH11853.	0.567
DgriGH10075	DgriGH11910	B4K3G9	B4JL90	GH10075.	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family.	0.527
DgriGH10075	DgriGH13061	B4K3G9	B4JR51	GH10075.	GH13061.	0.437
DgriGH10075	DgriGH13295	B4K3G9	B4JQ10	GH10075.	GH13295.	0.671
DgriGH10075	DgriGH13472	B4K3G9	B4JP90	GH10075.	GH13472.	0.589
DgriGH10075	DgriGH14857	B4K3G9	B4JT30	GH10075.	GH14857.	0.446
DgriGH10075	DgriGH17354	B4K3G9	B4JUV9	GH10075.	GH17354.	0.521
DgriGH10075	DgriGH17550	B4K3G9	B4K200	GH10075.	GH17550.	0.589
DgriGH10075	DgriGH17674	B4K3G9	B4JWX6	GH10075.	Nuclear pore protein.	0.593
DgriGH10075	DgriGH18341	B4K3G9	B4JF24	GH10075.	GH18341.	0.499
DgriGH10075	DgriGH18990	B4K3G9	B4JHU7	GH10075.	Nuclear pore protein.	0.593
DgriGH10075	DgriGH19208	B4K3G9	B4JRZ7	GH10075.	GH19208.	0.667
DgriGH10075	DgriGH19595	B4K3G9	B4JI07	GH10075.	GH19595; Belongs to the WD repeat SEC13 family.	0.617
DgriGH10075	DgriGH19600	B4K3G9	B4JRS6	GH10075.	GH19600.	0.570
DgriGH10075	DgriGH19959	B4K3G9	B4J8F7	GH10075.	GH19959.	0.526
DgriGH10075	DgriGH19964	B4K3G9	B4J8E9	GH10075.	GH19964.	0.589
DgriGH10075	DgriGH20846	B4K3G9	B4J5I7	GH10075.	Nuclear pore complex protein Nup75; Functions as a component of the nuclear pore complex (NPC).	0.655