151 items (Drosophila grimshawi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DgriGH14745	GH14745. (764 aa)
	DgriGH14709	GH14709. (210 aa)
	DgriGH15234	GH15234. (270 aa)
	DgriGH16899	GH16899. (1713 aa)
	DgriGH16904	GH16904. (331 aa)
	DgriGH14641	GH14641. (415 aa)
	DgriGH15146	GH15146; Belongs to the universal ribosomal protein uS4 family. (195 aa)
	DgriGH15107	GH15107. (263 aa)
	DgriGH14540	GH14540. (445 aa)
	DgriGH14499	GH14499. (1169 aa)
	DgriGH14471	GH14471; Belongs to the DEAD box helicase family. (603 aa)
	DgriGH15630	GH15630; Belongs to the RNR ribonuclease family. (1109 aa)
	DgriGH15625	GH15625. (693 aa)
	DgriGH15944	GH15944. (312 aa)
	DgriGH16572	GH16572. (501 aa)
	DgriGH14918	GH14918. (815 aa)
	DgriGH16627	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (574 aa)
	DgriGH20334	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (132 aa)
	DgriGH21568	GH21568. (665 aa)
	DgriGH21617	GH21617; Belongs to the DEAD box helicase family. (524 aa)
	DgriGH21076	GH21076. (331 aa)
	DgriGH21695	GH21695. (657 aa)
	DgriGH21749	GH21749. (200 aa)
	DgriGH20673	GH20673. (300 aa)
	DgriGH20043	GH20043; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	DgriGH20562	GH20562. (790 aa)
	DgriGH21920	GH21920. (514 aa)
	DgriGH20546	GH20546. (288 aa)
	DgriGH19943	GH19943. (108 aa)
	DgriGH21413	GH21413. (181 aa)
	DgriGH20474	GH20474; Belongs to the universal ribosomal protein uS9 family. (148 aa)
	DgriGH20469	GH20469. (2750 aa)
	DgriGH21429	GH21429. (484 aa)
	DgriGH20462	GH20462. (952 aa)
	GH22027	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (786 aa)
	DgriGH22060	GH22060. (296 aa)
	DgriGH19820	GH19820. (717 aa)
	DgriGH10885	GH10885; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	DgriGH10266	GH10266. (92 aa)
	DgriGH10769	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (665 aa)
	DgriGH10967	GH10967. (214 aa)
	DgriGH10227	GH10227. (289 aa)
	DgriGH10710	GH10710. (266 aa)
	DgriGH11046	GH11046. (338 aa)
	DgriGH10637	GH10637. (249 aa)
	DgriGH10574	GH10574. (209 aa)
	DgriGH11243	GH11243. (522 aa)
	dbe	KRR1 small subunit processome component homolog; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. Binds to RNA. Required for female germline development, cell viability during eye development and for survival of dividing cells and epithelial cells during early wing disk development (By similarity). (341 aa)
	DgriGH11299	GH11299. (222 aa)
	DgriGH10440	GH10440; Belongs to the universal ribosomal protein uS5 family. (268 aa)
	DgriGH11333	GH11333. (1074 aa)
	DgriGH18420	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	DgriGH18407	GH18407. (683 aa)
	DgriGH18406	GH18406. (121 aa)
	DgriGH19203	GH19203. (275 aa)
	DgriGH19240	GH19240. (911 aa)
	DgriGH18799	GH18799. (1396 aa)
	DgriGH18140	GH18140. (158 aa)
	DgriGH19510	40S ribosomal protein S27. (84 aa)
	DgriGH19518	GH19518; Belongs to the universal ribosomal protein uS7 family. (242 aa)
	DgriGH18079	Nucleolar protein 6. (1165 aa)
	DgriGH18066	GH18066. (581 aa)
	DgriGH18033	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (873 aa)
	DgriGH18024	GH18024. (298 aa)
	DgriGH19592	GH19592. (515 aa)
	DgriGH19597	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	DgriGH18547	GH18547. (930 aa)
	DgriGH18468	GH18468. (235 aa)
	DgriGH12901	GH12901. (65 aa)
	DgriGH12462	GH12462. (851 aa)
	DgriGH12205	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (476 aa)
	DgriGH12543	GH12543. (513 aa)
	DgriGH12544	GH12544. (151 aa)
	DgriGH12570	GH12570. (199 aa)
	DgriGH11990	GH11990. (204 aa)
	DgriGH12798	GH12798. (383 aa)
	DgriGH24524	GH24524. (360 aa)
	DgriGH24529	GH24529. (99 aa)
	DgriGH24446	GH24446. (473 aa)
	DgriGH24437	GH24437; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	DgriGH24611	GH24611. (426 aa)
	DgriGH24352	GH24352. (441 aa)
	DgriGH24620	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (248 aa)
	DgriGH24935	GH24935. (103 aa)
	DgriGH24635	GH24635; Belongs to the universal ribosomal protein uS7 family. (228 aa)
	DgriGH24703	GH24703. (535 aa)
	DgriGH24178	GH24178; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	DgriGH24866	GH24866. (607 aa)
	DgriGH24092	GH24092. (672 aa)
	DgriGH24884	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	DgriGH13456	GH13456. (694 aa)
	DgriGH13429	GH13429. (1067 aa)
	GH13339	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (419 aa)
	DgriGH13229	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (599 aa)
	DgriGH13670	GH13670; Belongs to the DEAD box helicase family. (518 aa)
	DgriGH13671	GH13671. (156 aa)
	DgriGH13718	GH13718. (2122 aa)
	DgriGH13163	GH13163. (512 aa)
	DgriGH22775	GH22775. (288 aa)
	DgriGH17448	GH17448. (244 aa)
	DgriGH13848	GH13848. (534 aa)
	DgriGH17488	GH17488. (854 aa)
	DgriGH17505	GH17505. (498 aa)
	DgriGH16167	GH16167. (588 aa)
	DgriGH17335	GH17335. (276 aa)
	DgriGH17341	GH17341; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	DgriGH17367	GH17367. (555 aa)
	DgriGH14648	GH14648; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	DgriGH14100	GH14100. (579 aa)
	DgriGH23108	GH23108. (626 aa)
	DgriGH22980	GH22980; Belongs to the universal ribosomal protein uS17 family. (196 aa)
	DgriGH22986	GH22986. (481 aa)
	DgriGH17712	GH17712. (612 aa)
	DgriGH17815	GH17815; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	DgriGH17689	GH17689. (1186 aa)
	DgriGH17878	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (836 aa)
	DgriGH17934	GH17934. (252 aa)
	DgriGH14312	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	DgriGH13979	GH13979. (307 aa)
	DgriGH22375	GH22375. (391 aa)
	DgriGH22400	GH22400. (931 aa)
	DgriGH25200	GH25200. (232 aa)
	DgriGH25137	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	GH25074	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (635 aa)
	RpS3A	40S ribosomal protein S3a; Essential for oogenesis; required for late follicle cell development. (268 aa)
	DgriGH11646	GH11646. (152 aa)
	DgriGH23884	GH23884. (152 aa)
	DgriGH25218	GH25218. (152 aa)
	DgriGH23558	GH23558. (152 aa)
	DgriGH24825	GH24825. (348 aa)
	DgriGH24814	GH24814. (163 aa)
	DgriGH13949	GH13949. (346 aa)
	DgriGH22572	GH22572. (151 aa)
	DgriGH23273	GH23273. (348 aa)
	DgriGH23366	GH23366. (200 aa)
	DgriGH25127	GH25127. (348 aa)
	DgriGH25116	GH25116. (348 aa)
	DgriGH25105	GH25105. (187 aa)
	DgriGH10330	GH10330. (426 aa)
	DgriGH22438	GH22438. (187 aa)
	DgriGH23753	GH23753. (187 aa)
	DgriGH23754	GH23754. (187 aa)
	DgriGH23254	GH23254. (269 aa)
	DgriGH22500	GH22500. (187 aa)
	DgriGH23742	GH23742. (152 aa)
	DgriGH11720	GH11720. (339 aa)
	DgriGH23535	GH23535. (152 aa)
	DgriGH23487	GH23487. (101 aa)
	DgriGH25039	GH25039. (59 aa)
	DgriGH23691	GH23691. (62 aa)
	DgriGH23436	GH23436. (201 aa)

Your Current Organism:

Drosophila grimshawi

NCBI taxonomy Id: 7222
Other names: D. grimshawi, Idiomyia grimshawi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DgriGH10227	DgriGH10440	B4JBF4	B4JE34	GH10227.	GH10440; Belongs to the universal ribosomal protein uS5 family.	0.738
DgriGH10227	DgriGH10574	B4JBF4	B4JDC2	GH10227.	GH10574.	0.526
DgriGH10227	DgriGH10885	B4JBF4	B4JAL1	GH10227.	GH10885; Belongs to the universal ribosomal protein uS15 family.	0.542
DgriGH10227	DgriGH10967	B4JBF4	B4JBD7	GH10227.	GH10967.	0.576
DgriGH10227	DgriGH11990	B4JBF4	B4JKU7	GH10227.	GH11990.	0.999
DgriGH10227	DgriGH12205	B4JBF4	B4JJQ4	GH10227.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.750
DgriGH10227	DgriGH13163	B4JBF4	B4JQL6	GH10227.	GH13163.	0.470
DgriGH10227	DgriGH13229	B4JBF4	B4JQA5	GH10227.	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.574
DgriGH10227	DgriGH14312	B4JBF4	B4JYK9	GH10227.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.459
DgriGH10227	DgriGH14641	B4JBF4	B4IXZ8	GH10227.	GH14641.	0.418
DgriGH10227	DgriGH14648	B4JBF4	B4JV05	GH10227.	GH14648; Belongs to the universal ribosomal protein uS15 family.	0.542
DgriGH10227	DgriGH14918	B4JBF4	B4J236	GH10227.	GH14918.	0.666
DgriGH10227	DgriGH15146	B4JBF4	B4IY80	GH10227.	GH15146; Belongs to the universal ribosomal protein uS4 family.	0.763
DgriGH10227	DgriGH16627	B4JBF4	B4J2J3	GH10227.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.643
DgriGH10227	DgriGH17335	B4JBF4	B4JUS1	GH10227.	GH17335.	0.672
DgriGH10227	DgriGH17341	B4JBF4	B4JUT2	GH10227.	GH17341; Belongs to the universal ribosomal protein uS11 family.	0.569
DgriGH10227	DgriGH17367	B4JBF4	B4JUX8	GH10227.	GH17367.	0.722
DgriGH10227	DgriGH18420	B4JBF4	B4JEN0	GH10227.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.740
DgriGH10227	DgriGH19510	B4JBF4	B4JGZ0	GH10227.	40S ribosomal protein S27.	0.643
DgriGH10227	DgriGH19943	B4JBF4	B4J8Q8	GH10227.	GH19943.	0.400