19 items (Drosophila grimshawi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DgriGH21648	GH21648. (328 aa)
	DgriGH21207	GH21207. (382 aa)
	DgriGH13348	GH13348. (322 aa)
	DgriGH24783	GH24783; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (255 aa)
	DgriGH22516	GH22516. (424 aa)
	DgriGH24642	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (460 aa)
	DgriGH24555	GH24555. (520 aa)
	DgriGH24496	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (445 aa)
	DgriGH18467	GH18467; Belongs to the mitochondrial carrier (TC 2.A.29) family. (340 aa)
	DgriGH18279	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). (439 aa)
	DgriGH20865	GH20865; Belongs to the enoyl-CoA hydratase/isomerase family. (293 aa)
	DgriGH17093	Dihydrolipoyl dehydrogenase. (504 aa)
	DgriGH16965	GH16965. (414 aa)
	DgriGH19800	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (322 aa)
	DgriGH21754	GH21754. (581 aa)
	DgriGH14119	GH14119. (700 aa)
	DgriGH17897	GH17897; Belongs to the thiolase-like superfamily. Thiolase family. (409 aa)
	DgriGH22640	GH22640; Belongs to the enoyl-CoA hydratase/isomerase family. (298 aa)
	DgriGH16630	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (354 aa)

Your Current Organism:

Drosophila grimshawi

NCBI taxonomy Id: 7222
Other names: D. grimshawi, Idiomyia grimshawi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DgriGH13348	DgriGH14119	B4JPR4	B4JXZ5	GH13348.	GH14119.	0.716
DgriGH13348	DgriGH16630	B4JPR4	B4JU41	GH13348.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.416
DgriGH13348	DgriGH16965	B4JPR4	B4IYD8	GH13348.	GH16965.	0.536
DgriGH13348	DgriGH17093	B4JPR4	B4J058	GH13348.	Dihydrolipoyl dehydrogenase.	0.998
DgriGH13348	DgriGH17897	B4JPR4	B4JX76	GH13348.	GH17897; Belongs to the thiolase-like superfamily. Thiolase family.	0.413
DgriGH13348	DgriGH18279	B4JPR4	B4JFE6	GH13348.	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).	0.999
DgriGH13348	DgriGH21754	B4JPR4	B4J6K3	GH13348.	GH21754.	0.909
DgriGH13348	DgriGH22516	B4JPR4	B4K041	GH13348.	GH22516.	0.831
DgriGH13348	DgriGH24496	B4JPR4	B4JLQ2	GH13348.	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.	0.990
DgriGH13348	DgriGH24642	B4JPR4	B4JMK3	GH13348.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.999
DgriGH14119	DgriGH13348	B4JXZ5	B4JPR4	GH14119.	GH13348.	0.716
DgriGH14119	DgriGH16630	B4JXZ5	B4JU41	GH14119.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.701
DgriGH14119	DgriGH16965	B4JXZ5	B4IYD8	GH14119.	GH16965.	0.505
DgriGH14119	DgriGH17897	B4JXZ5	B4JX76	GH14119.	GH17897; Belongs to the thiolase-like superfamily. Thiolase family.	0.469
DgriGH14119	DgriGH18279	B4JXZ5	B4JFE6	GH14119.	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).	0.715
DgriGH14119	DgriGH19800	B4JXZ5	B4JA17	GH14119.	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.	0.619
DgriGH14119	DgriGH20865	B4JXZ5	B4J590	GH14119.	GH20865; Belongs to the enoyl-CoA hydratase/isomerase family.	0.956
DgriGH14119	DgriGH21207	B4JXZ5	B4JRQ1	GH14119.	GH21207.	0.585
DgriGH14119	DgriGH21648	B4JXZ5	B4JRY1	GH14119.	GH21648.	0.585
DgriGH14119	DgriGH21754	B4JXZ5	B4J6K3	GH14119.	GH21754.	0.999