59 items (Drosophila grimshawi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DgriGH19306	GH19306. (1401 aa)
	DgriGH18195	GH18195. (855 aa)
	DgriGH16152	GH16152. (466 aa)
	DgriGH18162	GH18162. (503 aa)
	DgriGH14689	GH14689. (482 aa)
	DgriGH14688	GH14688. (243 aa)
	DgriGH16916	GH16916. (333 aa)
	DgriGH14992	GH14992. (241 aa)
	DgriGH15523	GH15523. (190 aa)
	DgriGH20864	GH20864. (621 aa)
	DgriGH21056	GH21056. (626 aa)
	DgriGH20836	GH20836. (735 aa)
	DgriGH20225	GH20225. (468 aa)
	DgriGH21120	GH21120; Belongs to the intermediate filament family. (623 aa)
	DgriGH21715	GH21715. (668 aa)
	DgriGH20114	GH20114. (126 aa)
	DgriGH20071	GH20071. (1217 aa)
	DgriGH21848	GH21848. (147 aa)
	DgriGH20603	Vang-like protein. (589 aa)
	DgriGH21334	GH21334. (767 aa)
	DgriGH22067	GH22067. (192 aa)
	DgriGH11421	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (276 aa)
	DgriGH10295	GH10295; Belongs to the intermediate filament family. (625 aa)
	DgriGH10826	GH10826. (380 aa)
	DgriGH10825	GH10825. (432 aa)
	DgriGH11549	GH11549. (325 aa)
	DgriGH11598	GH11598. (219 aa)
	DgriGH11618	GH11618. (1094 aa)
	DgriGH10626	GH10626; Belongs to the cytochrome b5 family. (196 aa)
	DgriGH10089	GH10089. (182 aa)
	DgriGH18301	GH18301. (355 aa)
	DgriGH19297	GH19297. (434 aa)
	DgriGH22518	GH22518. (528 aa)
	DgriGH23993	GH23993. (2067 aa)
	DgriGH23973	GH23973. (1913 aa)
	DgriGH22297	GH22297. (2369 aa)
	DgriGH22298	GH22298. (1700 aa)
	DgriGH22346	GH22346. (1122 aa)
	DgriGH14295	GH14295. (1726 aa)
	DgriGH17579	GH17579. (504 aa)
	DgriGH23057	GH23057. (1142 aa)
	DgriGH15905	GH15905. (596 aa)
	DgriGH17083	GH17083. (422 aa)
	DgriGH23808	GH23808. (943 aa)
	DgriGH16728	GH16728. (775 aa)
	DgriGH13043	GH13043. (1901 aa)
	DgriGH13153	Anion exchange protein. (1159 aa)
	DgriGH13506	GH13506. (628 aa)
	DgriGH24809	GH24809. (1535 aa)
	DgriGH24777	GH24777. (1089 aa)
	DgriGH24410	GH24410. (921 aa)
	DgriGH24467	GH24467. (269 aa)
	DgriGH24488	GH24488. (689 aa)
	DgriGH12612	Non-specific serine/threonine protein kinase. (645 aa)
	DgriGH18481	GH18481. (207 aa)
	DgriGH19047	GH19047. (1025 aa)
	DgriGH18044	GH18044. (940 aa)
	DgriGH18108	GH18108. (168 aa)
	DgriGH18163	GH18163. (293 aa)

Your Current Organism:

Drosophila grimshawi

NCBI taxonomy Id: 7222
Other names: D. grimshawi, Idiomyia grimshawi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DgriGH10089	DgriGH11421	B4JD04	B4JAA5	GH10089.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.497
DgriGH10089	DgriGH22518	B4JD04	B4K039	GH10089.	GH22518.	0.617
DgriGH10295	DgriGH11421	B4JAF2	B4JAA5	GH10295; Belongs to the intermediate filament family.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.439
DgriGH10295	DgriGH11598	B4JAF2	B4JBX6	GH10295; Belongs to the intermediate filament family.	GH11598.	0.419
DgriGH10295	DgriGH11618	B4JAF2	B4JC08	GH10295; Belongs to the intermediate filament family.	GH11618.	0.441
DgriGH10295	DgriGH12612	B4JAF2	B4JK86	GH10295; Belongs to the intermediate filament family.	Non-specific serine/threonine protein kinase.	0.454
DgriGH10295	DgriGH13506	B4JAF2	B4JPE9	GH10295; Belongs to the intermediate filament family.	GH13506.	0.517
DgriGH10295	DgriGH16916	B4JAF2	B4IXQ7	GH10295; Belongs to the intermediate filament family.	GH16916.	0.504
DgriGH10295	DgriGH18195	B4JAF2	B4JG26	GH10295; Belongs to the intermediate filament family.	GH18195.	0.442
DgriGH10295	DgriGH19297	B4JAF2	B4JFD4	GH10295; Belongs to the intermediate filament family.	GH19297.	0.577
DgriGH10295	DgriGH19306	B4JAF2	B4JFF0	GH10295; Belongs to the intermediate filament family.	GH19306.	0.535
DgriGH10295	DgriGH20225	B4JAF2	B4J5R4	GH10295; Belongs to the intermediate filament family.	GH20225.	0.614
DgriGH10295	DgriGH21120	B4JAF2	B4J687	GH10295; Belongs to the intermediate filament family.	GH21120; Belongs to the intermediate filament family.	0.917
DgriGH10295	DgriGH21715	B4JAF2	B4J6E1	GH10295; Belongs to the intermediate filament family.	GH21715.	0.614
DgriGH10295	DgriGH21848	B4JAF2	B4J7M5	GH10295; Belongs to the intermediate filament family.	GH21848.	0.511
DgriGH10295	DgriGH22067	B4JAF2	B4J9Y1	GH10295; Belongs to the intermediate filament family.	GH22067.	0.515
DgriGH10295	DgriGH23973	B4JAF2	B4JZP1	GH10295; Belongs to the intermediate filament family.	GH23973.	0.429
DgriGH10295	DgriGH23993	B4JAF2	B4JZR9	GH10295; Belongs to the intermediate filament family.	GH23993.	0.429
DgriGH10295	DgriGH24410	B4JAF2	B4JM22	GH10295; Belongs to the intermediate filament family.	GH24410.	0.461
DgriGH10626	DgriGH14689	B4JCV3	B4IXK0	GH10626; Belongs to the cytochrome b5 family.	GH14689.	0.633