Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CG3857 | CG6729 | FBpp0070335 | FBpp0079708 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Protein SMG8; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | 0.998 |
| CG3857 | CG7483 | FBpp0070335 | FBpp0081324 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. Involved in exon definition of genes containing long introns, including the rolled/MAPK gene. Has a role in oskar mRNA localization at the posterior pole of the developing oocyte. | 0.530 |
| CG3857 | Smg5 | FBpp0070335 | FBpp0080139 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Smg5, isoform A; Smg5 (Smg5) encodes a protein involved in mRNA catabolism. | 0.663 |
| CG3857 | Smg6 | FBpp0070335 | FBpp0084171 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | GH14566p; Smg6 (Smg6) encodes an RNA endonuclease that is required for nonsense mediated mRNA decay (NMD). Upon recognition of an NMD-targeted transcript, it cleaves the mRNA in the vicinity of the termination codon, exposing free 5' and 3' ends leading to the complete exonucleolytic degradation of the target. | 0.658 |
| CG3857 | Upf1 | FBpp0070335 | FBpp0073433 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Regulator of nonsense transcripts 1 homolog; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an Upf1-Upf2-Upf3 surveillance complex is believed to activate NMD (By similarity). | 0.670 |
| CG3857 | Upf2 | FBpp0070335 | FBpp0071072 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | RE04053p; Upf2 (Upf2) encodes a protein required for nonsense-mediated mRNA decay (NMD). It interacts directly with the product of Upf1 to identify and degrade NMD-substrate mRNAs, including mRNAs containing premature termination codons and a number of normal endogenous mRNAs. | 0.649 |
| CG3857 | Upf3 | FBpp0070335 | FBpp0072130 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Upf3, isoform B; Upf3 (Upf3) encodes a protein that regulates targets of the nonsense-mediated mRNA decay pathway. This pathway participates in homeostatic gene expression regulation and plays a quality control role in the elimination of mRNAs with premature termination codons. The product of Upf3 is involved in cell cycle progression and general developmental rate. | 0.611 |
| CG3857 | btz | FBpp0070335 | FBpp0303118 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Barentsz, isoform D; Barentsz (btz) encodes a component of the exon junction complex that is recruited to spliced mRNAs to mark where introns have been removed. It is required for the posterior localization of osk mRNA. | 0.523 |
| CG3857 | eRF1 | FBpp0070335 | FBpp0304202 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | Eukaryotic peptide chain release factor subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. | 0.644 |
| CG3857 | tsu | FBpp0070335 | FBpp0087648 | Protein SMG9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing nonC and recruited to stalled ribosomes (By similarity). | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. Involved in exon definition of genes containing long introns, including the rolled/MAPK gene. The mago-tsu heterodimer interacts with the EJC key regulator Pym leading to EJC disassembly in the cytoplasm. Has a role in oskar mRNA localization to the posterior pole of the developing oocyte. Belongs to the RBM8A family. | 0.723 |
| CG4612 | CG7483 | FBpp0297274 | FBpp0081324 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Eukaryotic initiation factor 4A-III; ATP-dependent RNA helicase. Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. Involved in exon definition of genes containing long introns, including the rolled/MAPK gene. Has a role in oskar mRNA localization at the posterior pole of the developing oocyte. | 0.609 |
| CG4612 | Cbp20 | FBpp0297274 | FBpp0082973 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...] | 0.633 |
| CG4612 | Cbp80 | FBpp0297274 | FBpp0070652 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp80 does not bind directly capped RNAs [...] | 0.602 |
| CG4612 | Pp2A-29B | FBpp0297274 | FBpp0308836 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Serine/threonine-protein phosphatase PP2A 65 kDa regulatory subunit; Protein phosphatase 2A at 29B (Pp2A-29B) encodes the structural A subunit of the trimeric PP2A phosphatase enzyme. It links the catalytic C subunit encoded by mts and a variable regulatory B family subunit, which directs the enzyme to distinct substrates. The roles of Pp2A-29B product include centriole duplication, chromosome segregation, autophagy, axonal transport, growth regulation, and active zone stabilization. | 0.510 |
| CG4612 | RpL40 | FBpp0297274 | FBpp0306837 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Ubiquitin-60S ribosomal protein L40; [Ubiquitin]: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...] | 0.533 |
| CG4612 | Smg5 | FBpp0297274 | FBpp0080139 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Smg5, isoform A; Smg5 (Smg5) encodes a protein involved in mRNA catabolism. | 0.550 |
| CG4612 | Smg6 | FBpp0297274 | FBpp0084171 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | GH14566p; Smg6 (Smg6) encodes an RNA endonuclease that is required for nonsense mediated mRNA decay (NMD). Upon recognition of an NMD-targeted transcript, it cleaves the mRNA in the vicinity of the termination codon, exposing free 5' and 3' ends leading to the complete exonucleolytic degradation of the target. | 0.553 |
| CG4612 | Ubi-p5E | FBpp0297274 | FBpp0311816 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Ubiquitin-5E, isoform A; Protein tag; ubiquitin protein ligase binding. It is involved in the biological process described with: ubiquitin-dependent protein catabolic process; protein ubiquitination; modification-dependent protein catabolic process; cellular protein modification process. | 0.587 |
| CG4612 | Upf1 | FBpp0297274 | FBpp0073433 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Regulator of nonsense transcripts 1 homolog; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an Upf1-Upf2-Upf3 surveillance complex is believed to activate NMD (By similarity). | 0.617 |
| CG4612 | btz | FBpp0297274 | FBpp0303118 | LD36772p; poly(U) RNA binding; mRNA 3'-UTR binding; mRNA binding; poly(A) binding; RNA binding. It is involved in the biological process described with: long-term memory; positive regulation of translation. | Barentsz, isoform D; Barentsz (btz) encodes a component of the exon junction complex that is recruited to spliced mRNAs to mark where introns have been removed. It is required for the posterior localization of osk mRNA. | 0.532 |
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