(33 nodes) U2 snRNP, and U4/U6 x U5 tri-snRNP complex network (Drosophila navojoa)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AWZ03_013576	Uncharacterized protein. (1232 aa)
	AWZ03_013057	Small nuclear ribonucleoprotein G. (76 aa)
	AWZ03_012668	Uncharacterized protein. (791 aa)
	AWZ03_012465	Uncharacterized protein. (1014 aa)
	AWZ03_012087	Matrin-type domain-containing protein. (503 aa)
	AWZ03_011467	Uncharacterized protein. (906 aa)
	AWZ03_010455	Uncharacterized protein. (340 aa)
	AWZ03_010311	Uncharacterized protein. (216 aa)
	AWZ03_009964	Uncharacterized protein. (187 aa)
	AWZ03_010165	Uncharacterized protein. (1933 aa)
	AWZ03_009090	WD_REPEATS_REGION domain-containing protein. (347 aa)
	AWZ03_008717	Uncharacterized protein. (110 aa)
	AWZ03_008826	Uncharacterized protein. (971 aa)
	AWZ03_008010	Nop domain-containing protein. (503 aa)
	AWZ03_007608	Sm domain-containing protein. (124 aa)
	AWZ03_007007	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
	AWZ03_007680	RRM domain-containing protein. (452 aa)
	AWZ03_006545	Uncharacterized protein. (250 aa)
	AWZ03_006308	Small nuclear ribonucleoprotein-associated protein. (198 aa)
	AWZ03_005744	Uncharacterized protein. (837 aa)
	AWZ03_003664	TOG domain-containing protein. (1332 aa)
	AWZ03_004115	PSP domain-containing protein. (744 aa)
	snRNP-U1-C	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family. (144 aa)
	AWZ03_003880	Matrin-type domain-containing protein. (260 aa)
	AWZ03_004330	Tr-type G domain-containing protein. (976 aa)
	AWZ03_003198	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (124 aa)
	AWZ03_003252	CPSF_A domain-containing protein. (1229 aa)
	AWZ03_002443	Uncharacterized protein. (1744 aa)
	AWZ03_001896	Small nuclear ribonucleoprotein Sm D3. (151 aa)
	AWZ03_001543	CCHC-type domain-containing protein. (766 aa)
	AWZ03_001892	MPN domain-containing protein. (2397 aa)
	AWZ03_000739	RRM domain-containing protein. (121 aa)
	AWZ03_000825	Uncharacterized protein; Belongs to the DEAD box helicase family. (795 aa)

Your Current Organism:

Drosophila navojoa

NCBI taxonomy Id: 7232
Other names: D. navojoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AWZ03_000739	AWZ03_000825	A0A484BUM1	A0A484BX58	RRM domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.986
AWZ03_000739	AWZ03_001892	A0A484BUM1	A0A484BUC8	RRM domain-containing protein.	MPN domain-containing protein.	0.854
AWZ03_000739	AWZ03_001896	A0A484BUM1	A0A484BSP6	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.913
AWZ03_000739	AWZ03_002443	A0A484BUM1	A0A484BSL3	RRM domain-containing protein.	Uncharacterized protein.	0.897
AWZ03_000739	AWZ03_003198	A0A484BUM1	A0A484BNF0	RRM domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.942
AWZ03_000739	AWZ03_003252	A0A484BUM1	A0A484BNJ8	RRM domain-containing protein.	CPSF_A domain-containing protein.	0.999
AWZ03_000739	AWZ03_003664	A0A484BUM1	A0A484BMC6	RRM domain-containing protein.	TOG domain-containing protein.	0.999
AWZ03_000739	AWZ03_003880	A0A484BUM1	A0A484BN75	RRM domain-containing protein.	Matrin-type domain-containing protein.	0.987
AWZ03_000739	AWZ03_004115	A0A484BUM1	A0A484BML6	RRM domain-containing protein.	PSP domain-containing protein.	0.999
AWZ03_000739	AWZ03_004330	A0A484BUM1	A0A484BND6	RRM domain-containing protein.	Tr-type G domain-containing protein.	0.725
AWZ03_000739	AWZ03_005744	A0A484BUM1	A0A484BIC5	RRM domain-containing protein.	Uncharacterized protein.	0.637
AWZ03_000739	AWZ03_006308	A0A484BUM1	A0A484BHP2	RRM domain-containing protein.	Small nuclear ribonucleoprotein-associated protein.	0.662
AWZ03_000739	AWZ03_006545	A0A484BUM1	A0A484BEF2	RRM domain-containing protein.	Uncharacterized protein.	0.931
AWZ03_000739	AWZ03_007007	A0A484BUM1	A0A484BCX8	RRM domain-containing protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.572
AWZ03_000739	AWZ03_007608	A0A484BUM1	A0A484BAX3	RRM domain-containing protein.	Sm domain-containing protein.	0.600
AWZ03_000739	AWZ03_008010	A0A484BUM1	A0A484BA77	RRM domain-containing protein.	Nop domain-containing protein.	0.531
AWZ03_000739	AWZ03_008717	A0A484BUM1	A0A484B8E3	RRM domain-containing protein.	Uncharacterized protein.	0.999
AWZ03_000739	AWZ03_008826	A0A484BUM1	A0A484B9Q9	RRM domain-containing protein.	Uncharacterized protein.	0.663
AWZ03_000739	AWZ03_009090	A0A484BUM1	A0A484B8B2	RRM domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.628
AWZ03_000739	AWZ03_009964	A0A484BUM1	A0A484B4E6	RRM domain-containing protein.	Uncharacterized protein.	0.747