(25 nodes) Histone deacetylation network (Drosophila sechellia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsecGM11498	GM11498. (1130 aa)
	DsecGM25788	GM25788. (424 aa)
	DsecGM24205	GM24205. (430 aa)
	DsecGM23455	GM23455. (343 aa)
	DsecGM26176	GM26176. (325 aa)
	DsecGM26255	GM26255. (2036 aa)
	DsecGM20350	GM20350. (2055 aa)
	DsecGM20787	GM20787. (273 aa)
	DsecGM14673	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (521 aa)
	DsecGM13789	GM13789. (512 aa)
	DsecGM12057	GM12057. (150 aa)
	DsecGM12763	GM12763. (328 aa)
	DsecGM12631	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily. (312 aa)
	DsecGM10631	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (438 aa)
	DsecGM10605	GM10605. (880 aa)
	DsecGM22965	GM22965. (664 aa)
	DsecGM22729	GM22729. (326 aa)
	DsecGM16739	GM16739. (700 aa)
	DsecGM10169	GM10169. (824 aa)
	DsecGM11524	GM11524. (52 aa)
	DsecGM11502	GM11499. (195 aa)
	DsecGM23107	NAD-dependent protein deacetylase; Belongs to the sirtuin family. Class I subfamily. (386 aa)
	DsecGM19975	GM19975. (479 aa)
	DsecGM20078	GM20078. (619 aa)
	DsecGM19662	GM19662. (311 aa)

Your Current Organism:

Drosophila sechellia

NCBI taxonomy Id: 7238
Other names: D. sechellia

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsecGM10169	DsecGM10631	B4IEF6	B4I409	GM10169.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.570
DsecGM10169	DsecGM11498	B4IEF6	B4IGQ0	GM10169.	GM11498.	0.802
DsecGM10169	DsecGM11502	B4IEF6	B4IGP6	GM10169.	GM11499.	0.404
DsecGM10169	DsecGM12631	B4IEF6	B4I0M1	GM10169.	NAD-dependent protein deacylase; NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues; Belongs to the sirtuin family. Class II subfamily.	0.495
DsecGM10169	DsecGM12763	B4IEF6	B4HZ53	GM10169.	GM12763.	0.923
DsecGM10169	DsecGM14673	B4IEF6	B4HU89	GM10169.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.919
DsecGM10169	DsecGM19975	B4IEF6	B4ILG2	GM10169.	GM19975.	0.778
DsecGM10169	DsecGM20078	B4IEF6	B4ILG3	GM10169.	GM20078.	0.778
DsecGM10169	DsecGM20350	B4IEF6	B4HPL3	GM10169.	GM20350.	0.436
DsecGM10169	DsecGM22965	B4IEF6	B4I762	GM10169.	GM22965.	0.511
DsecGM10169	DsecGM23455	B4IEF6	B4HHL9	GM10169.	GM23455.	0.801
DsecGM10169	DsecGM26176	B4IEF6	B4HJ75	GM10169.	GM26176.	0.618
DsecGM10605	DsecGM10631	B4I449	B4I409	GM10605.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.934
DsecGM10605	DsecGM11498	B4I449	B4IGQ0	GM10605.	GM11498.	0.722
DsecGM10605	DsecGM11502	B4I449	B4IGP6	GM10605.	GM11499.	0.722
DsecGM10605	DsecGM11524	B4I449	B4IGK5	GM10605.	GM11524.	0.578
DsecGM10605	DsecGM12057	B4I449	B4HWE6	GM10605.	GM12057.	0.552
DsecGM10605	DsecGM14673	B4I449	B4HU89	GM10605.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.994
DsecGM10605	DsecGM19975	B4I449	B4ILG2	GM10605.	GM19975.	0.870
DsecGM10605	DsecGM20078	B4I449	B4ILG3	GM10605.	GM20078.	0.870