(39 nodes) Axon extension network (Drosophila sechellia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsecGM21991	GM21991. (854 aa)
	DsecGM11474	GM11474. (601 aa)
	DsecGM11306	GM11306. (1383 aa)
	DsecGM11307	GM11307. (720 aa)
	DsecGM19267	Phosphodiesterase. (1204 aa)
	DsecGM18987	GM18987. (1410 aa)
	DsecGM15607	GM15607. (1815 aa)
	DsecGM22983	GM22983. (154 aa)
	DsecGM22804	GM22804. (111 aa)
	DsecGM22805	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (303 aa)
	DsecGM22843	GM22843; Belongs to the potassium channel family. (653 aa)
	DsecGM22844	GM22844. (123 aa)
	DsecGM17375	GM17375. (598 aa)
	DsecGM17110	GM17110; Cadherins are calcium-dependent cell adhesion proteins. (2044 aa)
	DsecGM17111	GM17111; Cadherins are calcium-dependent cell adhesion proteins. (3151 aa)
	DsecGM18235	GM18235. (219 aa)
	DsecGM16210	GM16210. (1201 aa)
	DsecGM18775	GM18775. (596 aa)
	DsecGM11912	Mitogen-activated protein kinase. (372 aa)
	DsecGM14225	GM14225. (192 aa)
	DsecGM14335	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily. (952 aa)
	DsecGM13739	GM13739. (2413 aa)
	DsecGM14058	GM14058. (935 aa)
	DsecGM21127	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (352 aa)
	DsecGM20804	GM20804. (2283 aa)
	DsecGM24995	GM24995. (764 aa)
	DsecGM24996	GM24996. (233 aa)
	DsecGM25464	GM25464; Belongs to the G-protein coupled receptor Fz/Smo family. (581 aa)
	DsecGM25451	GM25451. (1276 aa)
	DsecGM25436	GM25436. (1265 aa)
	DsecGM24629	GM24629. (785 aa)
	DsecGM25884	GM25884. (467 aa)
	DsecGM14888	GM14888; Belongs to the G-protein coupled receptor Fz/Smo family. (694 aa)
	DsecGM11518	GM11518. (1180 aa)
	DsecGM16493	GM16493. (1298 aa)
	DsecGM16457	GM16457. (1844 aa)
	DsecGM12038	GM12038; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family. (2216 aa)
	DsecGM21680	GM21680. (1305 aa)
	DsecGM23234	GM23234. (1543 aa)

Your Current Organism:

Drosophila sechellia

NCBI taxonomy Id: 7238
Other names: D. sechellia

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsecGM11306	DsecGM11307	B4IDR5	B4IDR4	GM11306.	GM11307.	0.823
DsecGM11306	DsecGM18235	B4IDR5	B4I2J1	GM11306.	GM18235.	0.618
DsecGM11307	DsecGM11306	B4IDR4	B4IDR5	GM11307.	GM11306.	0.823
DsecGM11307	DsecGM18235	B4IDR4	B4I2J1	GM11307.	GM18235.	0.583
DsecGM11474	DsecGM11518	B4IE13	B4IGL9	GM11474.	GM11518.	0.752
DsecGM11474	DsecGM11912	B4IE13	B4HWI3	GM11474.	Mitogen-activated protein kinase.	0.690
DsecGM11474	DsecGM14225	B4IE13	B4HVR1	GM11474.	GM14225.	0.668
DsecGM11474	DsecGM14888	B4IE13	B4IG02	GM11474.	GM14888; Belongs to the G-protein coupled receptor Fz/Smo family.	0.999
DsecGM11474	DsecGM18987	B4IE13	B4I9C0	GM11474.	GM18987.	0.987
DsecGM11474	DsecGM21127	B4IE13	B4HT00	GM11474.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.793
DsecGM11474	DsecGM22804	B4IE13	B4I6T7	GM11474.	GM22804.	0.976
DsecGM11474	DsecGM22805	B4IE13	B4I6T6	GM11474.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.976
DsecGM11474	DsecGM22983	B4IE13	B4I7A4	GM11474.	GM22983.	0.782
DsecGM11474	DsecGM25464	B4IE13	B4HHP7	GM11474.	GM25464; Belongs to the G-protein coupled receptor Fz/Smo family.	0.999
DsecGM11518	DsecGM11474	B4IGL9	B4IE13	GM11518.	GM11474.	0.752
DsecGM11518	DsecGM11912	B4IGL9	B4HWI3	GM11518.	Mitogen-activated protein kinase.	0.999
DsecGM11518	DsecGM14225	B4IGL9	B4HVR1	GM11518.	GM14225.	0.571
DsecGM11912	DsecGM11474	B4HWI3	B4IE13	Mitogen-activated protein kinase.	GM11474.	0.690
DsecGM11912	DsecGM11518	B4HWI3	B4IGL9	Mitogen-activated protein kinase.	GM11518.	0.999
DsecGM11912	DsecGM14225	B4HWI3	B4HVR1	Mitogen-activated protein kinase.	GM14225.	0.993