(6 nodes) SMAD-like domain superfamily network (Drosophila sechellia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsecGM16436	Mothers against decapentaplegic homolog. (769 aa)
	DsecGM20400	GM20400. (431 aa)
	DsecGM21319	GM21319. (515 aa)
	DsecGM18164	Mothers against decapentaplegic homolog. (545 aa)
	DsecGM15202	Mothers against decapentaplegic homolog. (569 aa)
	DsecGM11208	Mothers against decapentaplegic homolog. (486 aa)

Your Current Organism:

Drosophila sechellia

NCBI taxonomy Id: 7238
Other names: D. sechellia

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsecGM11208	DsecGM15202	B4IKX2	B4IBM7	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.508
DsecGM11208	DsecGM16436	B4IKX2	B4IJ10	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.999
DsecGM15202	DsecGM11208	B4IBM7	B4IKX2	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.508
DsecGM15202	DsecGM16436	B4IBM7	B4IJ10	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.759
DsecGM15202	DsecGM18164	B4IBM7	B4I2W3	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.508
DsecGM16436	DsecGM11208	B4IJ10	B4IKX2	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.999
DsecGM16436	DsecGM15202	B4IJ10	B4IBM7	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.759
DsecGM16436	DsecGM18164	B4IJ10	B4I2W3	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.999
DsecGM18164	DsecGM15202	B4I2W3	B4IBM7	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.508
DsecGM18164	DsecGM16436	B4I2W3	B4IJ10	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.999
DsecGM18164	DsecGM20400	B4I2W3	B4HNV2	Mothers against decapentaplegic homolog.	GM20400.	0.617
DsecGM20400	DsecGM18164	B4HNV2	B4I2W3	GM20400.	Mothers against decapentaplegic homolog.	0.617