46 items (Drosophila simulans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD15118	GD15118. (266 aa)
	DsimGD23783	GD23783. (888 aa)
	DsimGD22133	GD22133. (613 aa)
	DsimGD23844	POU domain protein. (601 aa)
	DsimGD23847	POU domain protein. (889 aa)
	DsimGD24333	GD24333. (954 aa)
	DsimGD24004	GD24004. (467 aa)
	DsimGD21953	GD21953. (390 aa)
	DsimGD23563	GD23563. (489 aa)
	DsimGD22744	GD22744. (576 aa)
	DsimGD22743	GD22743. (391 aa)
	DsimGD23260	GD23260. (322 aa)
	DsimGD10771	GD10771. (2580 aa)
	DsimGD11322	GD11322. (697 aa)
	DsimGD11852	GD11852. (449 aa)
	DsimGD11918	GD11918. (427 aa)
	twi	Twist. (476 aa)
	kni	Kni. (378 aa)
	DsimGD12630	GD12630. (385 aa)
	DsimGD12327	GD12327. (1024 aa)
	DsimGD14388	GD14388. (597 aa)
	DsimGD14390	GD14390. (687 aa)
	DsimGD19684	GD19684. (297 aa)
	DsimGD20718	GD20718. (487 aa)
	Abd-B	Abd-B. (519 aa)
	DsimGD20268	GD20268. (631 aa)
	DsimUbx	Ultrabithorax. (338 aa)
	DsimGD19066	GD19066. (736 aa)
	DsimGD19533	GD19533. (189 aa)
	DsimGD19532	GD19532. (539 aa)
	DsimGD19524	GD19524. (252 aa)
	DsimGD19522	GD19522. (351 aa)
	bcd	Bicoid. (489 aa)
	DsimGD19895	GD19895. (582 aa)
	DsimGD19518	GD19518. (463 aa)
	ftz	Ftz. (413 aa)
	DsimGD19515	GD19515. (374 aa)
	DsimGD18937	GD18937. (496 aa)
	DsimGD21550	GD21550. (452 aa)
	DsimGD24406	GD24406. (2054 aa)
	DsimGD17261	GD17261. (376 aa)
	DsimGD16839	GD16839. (691 aa)
	DsimGD16964	GD16964. (793 aa)
	DsimGD16514	GD16514. (723 aa)
	DsimGD15564	GD15564. (572 aa)
	DsimGD15563	GD15563. (326 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abd-B	DsimGD15118	B4QWE8	B4NT90	Abd-B.	GD15118.	0.416
Abd-B	DsimGD17261	B4QWE8	B4R5K9	Abd-B.	GD17261.	0.997
Abd-B	DsimGD19515	B4QWE8	B4QYY1	Abd-B.	GD19515.	0.719
Abd-B	DsimGD19518	B4QWE8	B4QYX7	Abd-B.	GD19518.	0.435
Abd-B	DsimGD19895	B4QWE8	B4QYX5	Abd-B.	GD19895.	0.697
Abd-B	DsimGD20268	B4QWE8	B4QWF0	Abd-B.	GD20268.	0.727
Abd-B	DsimGD20718	B4QWE8	B4QV74	Abd-B.	GD20718.	0.839
Abd-B	DsimUbx	B4QWE8	B4QWF6	Abd-B.	Ultrabithorax.	0.746
Abd-B	ftz	B4QWE8	B4QYX9	Abd-B.	Ftz.	0.562
Abd-B	twi	B4QWE8	B4QI46	Abd-B.	Twist.	0.411
DsimGD10771	DsimGD16514	B4QB33	B4R7F4	GD10771.	GD16514.	0.523
DsimGD10771	DsimGD16839	B4QB33	B4R5Y7	GD10771.	GD16839.	0.882
DsimGD10771	DsimGD19522	B4QB33	B4QYX0	GD10771.	GD19522.	0.417
DsimGD10771	kni	B4QB33	B4QJ56	GD10771.	Kni.	0.512
DsimGD11322	DsimGD15118	B4QBS0	B4NT90	GD11322.	GD15118.	0.594
DsimGD11322	DsimGD16964	B4QBS0	B4R764	GD11322.	GD16964.	0.594
DsimGD11322	DsimGD17261	B4QBS0	B4R5K9	GD11322.	GD17261.	0.416
DsimGD11322	DsimGD20268	B4QBS0	B4QWF0	GD11322.	GD20268.	0.730
DsimGD11322	DsimGD20718	B4QBS0	B4QV74	GD11322.	GD20718.	0.539
DsimGD11322	DsimGD23847	B4QBS0	B4Q480	GD11322.	POU domain protein.	0.612