(29 nodes) Mixed, incl. Periodic partitioning by pair rule gene, and Ectoderm and mesoderm interaction network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD15118	GD15118. (266 aa)
	DsimGD23783	GD23783. (888 aa)
	DsimGD22133	GD22133. (613 aa)
	DsimGD23844	POU domain protein. (601 aa)
	DsimGD23847	POU domain protein. (889 aa)
	DsimGD24004	GD24004. (467 aa)
	DsimGD21953	GD21953. (390 aa)
	DsimGD23563	GD23563. (489 aa)
	DsimGD22744	GD22744. (576 aa)
	DsimGD22743	GD22743. (391 aa)
	DsimGD23260	GD23260. (322 aa)
	DsimGD10771	GD10771. (2580 aa)
	DsimGD11918	GD11918. (427 aa)
	twi	Twist. (476 aa)
	kni	Kni. (378 aa)
	DsimGD12630	GD12630. (385 aa)
	DsimGD12327	GD12327. (1024 aa)
	DsimGD19684	GD19684. (297 aa)
	DsimGD19066	GD19066. (736 aa)
	DsimGD19522	GD19522. (351 aa)
	bcd	Bicoid. (489 aa)
	ftz	Ftz. (413 aa)
	DsimGD18937	GD18937. (496 aa)
	DsimGD21550	GD21550. (452 aa)
	DsimGD24406	GD24406. (2054 aa)
	DsimGD16839	GD16839. (691 aa)
	DsimGD16514	GD16514. (723 aa)
	DsimGD15564	GD15564. (572 aa)
	DsimGD15563	GD15563. (326 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10771	DsimGD16514	B4QB33	B4R7F4	GD10771.	GD16514.	0.523
DsimGD10771	DsimGD16839	B4QB33	B4R5Y7	GD10771.	GD16839.	0.882
DsimGD10771	DsimGD19522	B4QB33	B4QYX0	GD10771.	GD19522.	0.417
DsimGD10771	kni	B4QB33	B4QJ56	GD10771.	Kni.	0.512
DsimGD11918	DsimGD22743	B4QD61	B4Q9M8	GD11918.	GD22743.	0.532
DsimGD11918	DsimGD22744	B4QD61	B4Q9M6	GD11918.	GD22744.	0.615
DsimGD11918	DsimGD23783	B4QD61	B4Q383	GD11918.	GD23783.	0.801
DsimGD11918	ftz	B4QD61	B4QYX9	GD11918.	Ftz.	0.601
DsimGD12327	DsimGD12630	B4QPW1	B4QJY1	GD12327.	GD12630.	0.413
DsimGD12327	DsimGD22133	B4QPW1	B4Q3P8	GD12327.	GD22133.	0.407
DsimGD12327	DsimGD23563	B4QPW1	B4Q797	GD12327.	GD23563.	0.413
DsimGD12327	ftz	B4QPW1	B4QYX9	GD12327.	Ftz.	0.998
DsimGD12630	DsimGD12327	B4QJY1	B4QPW1	GD12630.	GD12327.	0.413
DsimGD12630	DsimGD19066	B4QJY1	B4QXR5	GD12630.	GD19066.	0.723
DsimGD12630	DsimGD23844	B4QJY1	B4Q476	GD12630.	POU domain protein.	0.682
DsimGD12630	DsimGD24004	B4QJY1	B4Q6E0	GD12630.	GD24004.	0.630
DsimGD15118	DsimGD15563	B4NT90	B4R7T9	GD15118.	GD15563.	0.706
DsimGD15118	DsimGD15564	B4NT90	B4R7T8	GD15118.	GD15564.	0.706
DsimGD15118	DsimGD16839	B4NT90	B4R5Y7	GD15118.	GD16839.	0.419
DsimGD15118	DsimGD18937	B4NT90	B4R0K1	GD15118.	GD18937.	0.588