12 items (Drosophila simulans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD24333	GD24333. (954 aa)
	DsimGD11322	GD11322. (697 aa)
	DsimGD20718	GD20718. (487 aa)
	Abd-B	Abd-B. (519 aa)
	DsimGD20268	GD20268. (631 aa)
	DsimUbx	Ultrabithorax. (338 aa)
	DsimGD19524	GD19524. (252 aa)
	DsimGD19895	GD19895. (582 aa)
	DsimGD19518	GD19518. (463 aa)
	DsimGD19515	GD19515. (374 aa)
	DsimGD17261	GD17261. (376 aa)
	DsimGD16964	GD16964. (793 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abd-B	DsimGD17261	B4QWE8	B4R5K9	Abd-B.	GD17261.	0.997
Abd-B	DsimGD19515	B4QWE8	B4QYY1	Abd-B.	GD19515.	0.719
Abd-B	DsimGD19518	B4QWE8	B4QYX7	Abd-B.	GD19518.	0.435
Abd-B	DsimGD19895	B4QWE8	B4QYX5	Abd-B.	GD19895.	0.697
Abd-B	DsimGD20268	B4QWE8	B4QWF0	Abd-B.	GD20268.	0.727
Abd-B	DsimGD20718	B4QWE8	B4QV74	Abd-B.	GD20718.	0.839
Abd-B	DsimUbx	B4QWE8	B4QWF6	Abd-B.	Ultrabithorax.	0.746
DsimGD11322	DsimGD16964	B4QBS0	B4R764	GD11322.	GD16964.	0.594
DsimGD11322	DsimGD17261	B4QBS0	B4R5K9	GD11322.	GD17261.	0.416
DsimGD11322	DsimGD20268	B4QBS0	B4QWF0	GD11322.	GD20268.	0.730
DsimGD11322	DsimGD20718	B4QBS0	B4QV74	GD11322.	GD20718.	0.539
DsimGD16964	DsimGD11322	B4R764	B4QBS0	GD16964.	GD11322.	0.594
DsimGD17261	Abd-B	B4R5K9	B4QWE8	GD17261.	Abd-B.	0.997
DsimGD17261	DsimGD11322	B4R5K9	B4QBS0	GD17261.	GD11322.	0.416
DsimGD17261	DsimGD19515	B4R5K9	B4QYY1	GD17261.	GD19515.	0.975
DsimGD17261	DsimGD19518	B4R5K9	B4QYX7	GD17261.	GD19518.	0.992
DsimGD17261	DsimGD19524	B4R5K9	B4QYW8	GD17261.	GD19524.	0.530
DsimGD17261	DsimGD19895	B4R5K9	B4QYX5	GD17261.	GD19895.	0.997
DsimGD17261	DsimGD20268	B4R5K9	B4QWF0	GD17261.	GD20268.	0.984
DsimGD17261	DsimGD20718	B4R5K9	B4QV74	GD17261.	GD20718.	0.998