(60 nodes) Mixed, incl. Helix loop helix domain, and Embryonic heart tube development network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD20641	CG6913 protein. (195 aa)
	DsimGD15288	GD15288. (435 aa)
	DsimGD17621	GD17621. (213 aa)
	DsimGD24607	GD24607. (375 aa)
	DsimGD23340	GD23340. (665 aa)
	DsimGD23341	GD23341. (581 aa)
	DsimGD23921	GD23921. (1603 aa)
	DsimGD21956	GD21956. (548 aa)
	DsimGD22883	GD22883. (620 aa)
	DsimGD24118	GD24118. (232 aa)
	DsimGD22293	GD22293. (241 aa)
	DsimGD22284	GD22284. (174 aa)
	DsimGD23678	GD23678. (844 aa)
	DsimGD21828	GD21828. (197 aa)
	DsimGD21801	GD21801. (534 aa)
	DsimGD22270	GD22270. (176 aa)
	DsimGD22269	GD22269. (281 aa)
	DsimGD23691	GD23691. (314 aa)
	DsimGD23692	GD23692. (354 aa)
	DsimGD21780	GD21780. (438 aa)
	DsimGD21779	GD21779. (122 aa)
	DsimGD24979	GD24979. (596 aa)
	DsimGD11901	GD11901. (327 aa)
	DsimGD10352	GD10352. (469 aa)
	DsimGD25245	GD25245. (417 aa)
	DsimGD11547	GD11547. (903 aa)
	DsimGD25656	GD25656. (633 aa)
	DsimGD25551	GD25551. (188 aa)
	DsimGD12667	GD12667. (540 aa)
	DsimGD13937	GD13937. (257 aa)
	DsimGD13944	GD13944. (463 aa)
	DsimGD12614	GD12614. (644 aa)
	DsimGD14043	GD14043. (321 aa)
	DsimGD13571	GD13571. (199 aa)
	DsimGD13584	GD13584. (469 aa)
	DsimGD13634	GD13634. (213 aa)
	DsimGD14703	GD14703. (398 aa)
	DsimGD12837	GD12837. (555 aa)
	DsimGD18809	GD18809. (680 aa)
	DsimGD20197	GD20197. (445 aa)
	DsimGD20769	GD20769. (123 aa)
	DsimGD19065	GD19065. (83 aa)
	DsimGD19064	GD19064. (696 aa)
	DsimGD18530	GD18530. (284 aa)
	DsimGD20889	GD20889. (292 aa)
	DsimGD18030	GD18030. (168 aa)
	DsimGD18028	GD18028. (510 aa)
	DsimGD19915	GD19915. (251 aa)
	DsimGD19422	GD19422. (116 aa)
	tin	Tin. (208 aa)
	DsimGD21552	GD21552. (592 aa)
	DsimGD17048	GD17048. (678 aa)
	DsimGD17495	GD17495. (657 aa)
	run	Runt. (510 aa)
	DsimGD16284	GD16284. (267 aa)
	DsimGD17400	GD17400. (371 aa)
	DsimGD17401	GD17401. (106 aa)
	sc	Scute. (334 aa)
	DsimGD16504	GD16504. (466 aa)
	l(1)sc	Lethal of scute. (257 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10352	DsimGD17400	B4QCN8	B4R708	GD10352.	GD17400.	0.918
DsimGD10352	DsimGD20197	B4QCN8	B4QUI8	GD10352.	GD20197.	0.649
DsimGD10352	DsimGD24979	B4QCN8	B4QBH1	GD10352.	GD24979.	0.993
DsimGD10352	DsimGD25656	B4QCN8	B4QFY9	GD10352.	GD25656.	0.694
DsimGD11547	DsimGD16284	B4QFI8	B4R4J8	GD11547.	GD16284.	0.451
DsimGD11547	DsimGD16504	B4QFI8	B4R7D8	GD11547.	GD16504.	0.431
DsimGD11547	DsimGD17048	B4QFI8	B4R375	GD11547.	GD17048.	0.512
DsimGD11547	DsimGD22883	B4QFI8	B4Q7K4	GD11547.	GD22883.	0.433
DsimGD11547	DsimGD24979	B4QFI8	B4QBH1	GD11547.	GD24979.	0.474
DsimGD11901	DsimGD12667	B4QCK9	B4QJ20	GD11901.	GD12667.	0.802
DsimGD11901	DsimGD18530	B4QCK9	B4QYN0	GD11901.	GD18530.	0.443
DsimGD11901	DsimGD21801	B4QCK9	B4Q8Z7	GD11901.	GD21801.	0.444
DsimGD11901	l(1)sc	B4QCK9	O77032	GD11901.	Lethal of scute.	0.417
DsimGD11901	sc	B4QCK9	B4R7D6	GD11901.	Scute.	0.557
DsimGD12614	DsimGD19915	B4QK07	B4QZ09	GD12614.	GD19915.	0.444
DsimGD12614	DsimGD21779	B4QK07	B4Q9G5	GD12614.	GD21779.	0.580
DsimGD12614	DsimGD21780	B4QK07	B4Q9G3	GD12614.	GD21780.	0.580
DsimGD12614	DsimGD21801	B4QK07	B4Q8Z7	GD12614.	GD21801.	0.544
DsimGD12614	DsimGD24118	B4QK07	B4Q800	GD12614.	GD24118.	0.637
DsimGD12667	DsimGD11901	B4QJ20	B4QCK9	GD12667.	GD11901.	0.802