(42 nodes) Septate junction assembly network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD24713	Tetraspanin. (244 aa)
	DsimGD14857	CG6981 protein. (162 aa)
	DsimGD17020	GD17020. (298 aa)
	DsimGD19388	Sodium/potassium-transporting ATPase subunit alpha. (1092 aa)
	DsimGD18441	GD18441. (741 aa)
	DsimGD18442	GD18442. (1170 aa)
	DsimGD19869	Non-specific serine/threonine protein kinase. (701 aa)
	DsimGD18605	GD18605. (258 aa)
	DsimGD21290	GD21290. (774 aa)
	DsimGD21289	GD21289. (2647 aa)
	DsimGD19187	GD19187. (169 aa)
	DsimGD19724	GD19724. (282 aa)
	DsimGD19723	GD19723. (536 aa)
	DsimGD19722	GD19722. (515 aa)
	DsimGD16568	GD16568. (923 aa)
	DsimGD12707	GD12707. (819 aa)
	DsimGD13191	GD13191. (245 aa)
	DsimGD14363	GD14363. (1366 aa)
	DsimGD13868	GD13868. (136 aa)
	DsimGD12781	GD12781. (158 aa)
	DsimGD14675	GD14675. (146 aa)
	DsimGD15041	GD15041. (98 aa)
	DsimGD13099	GD13099. (355 aa)
	DsimGD10742	GD10742. (354 aa)
	DsimGD10076	GD10076. (372 aa)
	DsimGD10890	GD10890. (173 aa)
	DsimGD10889	GD10889. (215 aa)
	DsimGD10381	GD10381. (143 aa)
	DsimGD21942	GD21942. (956 aa)
	DsimGD22423	GD22423. (326 aa)
	Tep6	Thioester-containing protein 6. (1762 aa)
	DsimGD23035	GD23035. (153 aa)
	DsimGD22996	GD22996. (1161 aa)
	DsimGD22540	GD22540. (340 aa)
	DsimGD23827	GD23827. (151 aa)
	DsimGD21680	GD21680; Belongs to the MAGUK family. (644 aa)
	DsimGD24716	GD24716. (154 aa)
	DsimGD15163	GD15163. (357 aa)
	DsimGD16087	GD16087. (125 aa)
	DsimGD16907	GD16907. (601 aa)
	DsimGD16825	GD16825. (149 aa)
	DsimGD15513	GD15513. (131 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10381	DsimGD10890	B4QCN5	B4QCX0	GD10381.	GD10890.	0.816
DsimGD10381	DsimGD12707	B4QCN5	B4QRP1	GD10381.	GD12707.	0.416
DsimGD10381	DsimGD12781	B4QCN5	B4QQA2	GD10381.	GD12781.	0.732
DsimGD10381	DsimGD14363	B4QCN5	B4QR65	GD10381.	GD14363.	0.841
DsimGD10381	DsimGD16825	B4QCN5	B4R5W2	GD10381.	GD16825.	0.510
DsimGD10381	DsimGD16907	B4QCN5	B4R6J8	GD10381.	GD16907.	0.725
DsimGD10381	DsimGD18605	B4QCN5	B4QX74	GD10381.	GD18605.	0.893
DsimGD10381	DsimGD19388	B4QCN5	B4R1P5	GD10381.	Sodium/potassium-transporting ATPase subunit alpha.	0.666
DsimGD10381	DsimGD19722	B4QCN5	B4QV10	GD10381.	GD19722.	0.675
DsimGD10381	DsimGD19723	B4QCN5	B4QV11	GD10381.	GD19723.	0.675
DsimGD10381	DsimGD19724	B4QCN5	B4QV12	GD10381.	GD19724.	0.675
DsimGD10381	DsimGD22540	B4QCN5	B4Q521	GD10381.	GD22540.	0.588
DsimGD10381	DsimGD23035	B4QCN5	B4Q659	GD10381.	GD23035.	0.561
DsimGD10381	DsimGD23827	B4QCN5	B4Q3R7	GD10381.	GD23827.	0.675
DsimGD10381	DsimGD24716	B4QCN5	B4NTU7	GD10381.	GD24716.	0.453
DsimGD10381	Tep6	B4QCN5	B4Q695	GD10381.	Thioester-containing protein 6.	0.584
DsimGD10742	DsimGD13099	B4QID9	B4QJV8	GD10742.	GD13099.	0.735
DsimGD10742	DsimGD18441	B4QID9	B4R0N6	GD10742.	GD18441.	0.666
DsimGD10742	DsimGD18442	B4QID9	B4R0N5	GD10742.	GD18442.	0.853
DsimGD10889	DsimGD10890	B4QCW9	B4QCX0	GD10889.	GD10890.	0.817