(49 nodes) Cell-substrate junction network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD23428	GD23428. (1201 aa)
	DsimGD21644	GD17716. (178 aa)
	DsimGD15308	GD15308. (392 aa)
	DsimGD17346	GD17346. (220 aa)
	DsimGD17345	GD17345. (495 aa)
	DsimGD16875	Integrin beta; Belongs to the integrin beta chain family. (838 aa)
	DsimGD15725	GD15725; Belongs to the integrin alpha chain family. (1343 aa)
	DsimGD15732	GD15732. (209 aa)
	DsimGD15896	GD15896; Belongs to the integrin alpha chain family. (985 aa)
	DsimGD24360	GD24360. (584 aa)
	DsimGD17666	GD17666. (975 aa)
	DsimGD18987	GD18987. (369 aa)
	DsimGD18542	LIM domain-containing protein. (348 aa)
	DsimGD20789	GD20789. (714 aa)
	DsimGD14405	GD14405. (458 aa)
	DsimGD14851	GD14851. (2585 aa)
	DsimGD14850	GD14850. (1459 aa)
	DsimGD13841	GD13841. (516 aa)
	DsimGD13812	GD13812. (711 aa)
	DsimGD14686	GD14686. (586 aa)
	DsimGD12448	GD12448. (556 aa)
	DsimGD12452	GD12452. (1421 aa)
	DsimGD14104	GD14104. (507 aa)
	DsimGD14103	GD14103. (660 aa)
	DsimGD13548	GD13548. (804 aa)
	DsimGD14943	GD14943. (448 aa)
	DsimGD13917	GD13917. (435 aa)
	DsimGD13163	GD13163. (378 aa)
	DsimGD13165	GD13165. (228 aa)
	DsimGD25597	GD25597. (1571 aa)
	DsimGD11105	GD11105; Belongs to the integrin alpha chain family. (1115 aa)
	DsimGD11093	GD11093. (532 aa)
	DsimGD11092	GD11092. (309 aa)
	DsimGD25644	GD25644. (1301 aa)
	DsimGD11532	GD11532. (537 aa)
	DsimGD25733	GD25733. (4046 aa)
	DsimGD25734	GD25734. (690 aa)
	DsimGD10228	GD10228. (574 aa)
	DsimGD10251	GD10251. (774 aa)
	DsimGD25321	GD25321. (191 aa)
	DsimGD11445	GD11445. (190 aa)
	DsimGD24230	GD24230. (2043 aa)
	DsimGD21793	GD21793. (217 aa)
	DsimGD21830	GD21830. (2174 aa)
	DsimGD17802	GD17802. (61 aa)
	DsimGD22052	GD22052. (283 aa)
	DsimGD22550	GD22550. (1060 aa)
	DsimGD21763	GD21763. (678 aa)
	DsimGD17466	GD17466. (367 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10228	DsimGD11532	B4QER3	B4QF40	GD10228.	GD11532.	0.583
DsimGD10251	DsimGD14103	B4QEB1	B4QM43	GD10251.	GD14103.	0.599
DsimGD10251	DsimGD14104	B4QEB1	B4QM44	GD10251.	GD14104.	0.599
DsimGD10251	DsimGD14943	B4QEB1	B4QJP7	GD10251.	GD14943.	0.713
DsimGD10251	DsimGD17466	B4QEB1	B4R7T6	GD10251.	GD17466.	0.409
DsimGD11105	DsimGD14103	B4QGF1	B4QM43	GD11105; Belongs to the integrin alpha chain family.	GD14103.	0.835
DsimGD11105	DsimGD14104	B4QGF1	B4QM44	GD11105; Belongs to the integrin alpha chain family.	GD14104.	0.835
DsimGD11105	DsimGD15725	B4QGF1	B4R628	GD11105; Belongs to the integrin alpha chain family.	GD15725; Belongs to the integrin alpha chain family.	0.485
DsimGD11105	DsimGD15732	B4QGF1	B4R613	GD11105; Belongs to the integrin alpha chain family.	GD15732.	0.426
DsimGD11105	DsimGD15896	B4QGF1	B4R4A3	GD11105; Belongs to the integrin alpha chain family.	GD15896; Belongs to the integrin alpha chain family.	0.632
DsimGD11105	DsimGD16875	B4QGF1	B4R6A1	GD11105; Belongs to the integrin alpha chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.970
DsimGD11105	DsimGD21763	B4QGF1	B4Q9J5	GD11105; Belongs to the integrin alpha chain family.	GD21763.	0.921
DsimGD11105	DsimGD25321	B4QGF1	B4QE27	GD11105; Belongs to the integrin alpha chain family.	GD25321.	0.534
DsimGD11532	DsimGD10228	B4QF40	B4QER3	GD11532.	GD10228.	0.583
DsimGD12448	DsimGD24360	B4QMX0	B4R2I3	GD12448.	GD24360.	0.520
DsimGD12452	DsimGD13548	B4QMW5	B4QKT2	GD12452.	GD13548.	0.744
DsimGD12452	DsimGD24230	B4QMW5	B4QA19	GD12452.	GD24230.	0.631
DsimGD13548	DsimGD12452	B4QKT2	B4QMW5	GD13548.	GD12452.	0.744
DsimGD13548	DsimGD14103	B4QKT2	B4QM43	GD13548.	GD14103.	0.866
DsimGD13548	DsimGD14104	B4QKT2	B4QM44	GD13548.	GD14104.	0.866