(12 nodes) Subapical complex network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD23685	GD23685. (268 aa)
	DsimGD23233	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (894 aa)
	DsimGD25642	Protein kinase C. (580 aa)
	DsimGD13649	GD13649. (871 aa)
	DsimGD21088	GD21088. (2287 aa)
	DsimGD18238	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family. (212 aa)
	DsimGD18714	GD18714. (1501 aa)
	DsimGD18713	GD18713. (503 aa)
	DsimGD24360	GD24360. (584 aa)
	DsimGD15678	GD15678. (351 aa)
	DsimGD16887	GD16887. (512 aa)
	DsimGD16093	GD16093. (634 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD13649	DsimGD15678	B4QML2	B4R6G0	GD13649.	GD15678.	0.880
DsimGD13649	DsimGD16093	B4QML2	B4R6S1	GD13649.	GD16093.	0.733
DsimGD13649	DsimGD16887	B4QML2	B4R6G9	GD13649.	GD16887.	0.989
DsimGD13649	DsimGD18238	B4QML2	B4QUA4	GD13649.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.844
DsimGD13649	DsimGD21088	B4QML2	B4QT41	GD13649.	GD21088.	0.998
DsimGD13649	DsimGD25642	B4QML2	B4QGC4	GD13649.	Protein kinase C.	0.938
DsimGD15678	DsimGD13649	B4R6G0	B4QML2	GD15678.	GD13649.	0.880
DsimGD15678	DsimGD16093	B4R6G0	B4R6S1	GD15678.	GD16093.	0.408
DsimGD15678	DsimGD16887	B4R6G0	B4R6G9	GD15678.	GD16887.	0.920
DsimGD15678	DsimGD18238	B4R6G0	B4QUA4	GD15678.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.788
DsimGD15678	DsimGD21088	B4R6G0	B4QT41	GD15678.	GD21088.	0.968
DsimGD15678	DsimGD25642	B4R6G0	B4QGC4	GD15678.	Protein kinase C.	0.999
DsimGD16093	DsimGD13649	B4R6S1	B4QML2	GD16093.	GD13649.	0.733
DsimGD16093	DsimGD15678	B4R6S1	B4R6G0	GD16093.	GD15678.	0.408
DsimGD16093	DsimGD16887	B4R6S1	B4R6G9	GD16093.	GD16887.	0.688
DsimGD16093	DsimGD18238	B4R6S1	B4QUA4	GD16093.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.524
DsimGD16093	DsimGD21088	B4R6S1	B4QT41	GD16093.	GD21088.	0.915
DsimGD16093	DsimGD25642	B4R6S1	B4QGC4	GD16093.	Protein kinase C.	0.773
DsimGD16887	DsimGD13649	B4R6G9	B4QML2	GD16887.	GD13649.	0.989
DsimGD16887	DsimGD15678	B4R6G9	B4R6G0	GD16887.	GD15678.	0.920