(41 nodes) Dynein intermediate chain binding network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD17381	GD17381. (330 aa)
	DsimGD15126	GD15126. (3064 aa)
	DsimGD15088	GD15088. (217 aa)
	DsimGD15077	GD15077. (390 aa)
	DsimGD24683	GD24683. (1183 aa)
	DsimGD24744	GD24744. (96 aa)
	DsimGD24507	GD24507. (105 aa)
	DsimGD21619	Dynein light chain roadblock. (97 aa)
	DsimGD23096	Dynein light chain. (89 aa)
	DsimGD24114	GD24114. (281 aa)
	DsimGD24116	GD24116. (3288 aa)
	DsimGD22844	Dynein light chain roadblock. (97 aa)
	DsimGD21850	GD21850. (4107 aa)
	DsimGD25477	GD25477. (68 aa)
	DsimGD11269	Dynein light chain roadblock. (97 aa)
	DsimGD11860	GD11860. (130 aa)
	DsimGD10456	GD10456. (261 aa)
	DsimGD11487	GD11487. (111 aa)
	DsimGD10204	GD10204. (183 aa)
	DsimGD11181	GD11181. (1215 aa)
	DsimGD14461	GD14461. (317 aa)
	DsimGD14462	GD14462. (941 aa)
	DsimGD14497	GD14497. (210 aa)
	DsimGD13620	Dynein light chain roadblock. (104 aa)
	DsimGD13441	GD13441. (2891 aa)
	DsimGD14795	GD14795. (309 aa)
	DsimGD14796	GD14796. (501 aa)
	DsimGD13229	GD13229. (2433 aa)
	DsimGD13231	GD13231. (848 aa)
	DsimGD13865	GD13865. (2700 aa)
	DsimGD13866	GD13866. (1642 aa)
	DsimGD19225	GD19225. (111 aa)
	DsimGD20745	GD20745. (173 aa)
	DsimGD20269	Dynein light chain roadblock. (101 aa)
	DsimGD20774	GD20774. (57 aa)
	DsimGD20775	GD20775. (4730 aa)
	DsimGD18081	GD18081. (598 aa)
	DsimGD21374	GD21374. (2951 aa)
	DsimGD20425	GD20425. (169 aa)
	DsimGD20426	GD20426. (652 aa)
	DsimGD20019	GD20019. (3194 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD10204	DsimGD11269	B4QF79	B4QAU0	GD10204.	Dynein light chain roadblock.	0.459
DsimGD10204	DsimGD11487	B4QF79	B4QEI7	GD10204.	GD11487.	0.475
DsimGD10204	DsimGD11860	B4QF79	B4QBZ7	GD10204.	GD11860.	0.459
DsimGD10204	DsimGD19225	B4QF79	B4QUG3	GD10204.	GD19225.	0.750
DsimGD10204	DsimGD20745	B4QF79	B4QVW1	GD10204.	GD20745.	0.474
DsimGD10204	DsimGD21619	B4QF79	B4Q4V8	GD10204.	Dynein light chain roadblock.	0.459
DsimGD10204	DsimGD22844	B4QF79	B4Q825	GD10204.	Dynein light chain roadblock.	0.459
DsimGD10204	DsimGD23096	B4QF79	B4Q740	GD10204.	Dynein light chain.	0.616
DsimGD10204	DsimGD24744	B4QF79	B4NU11	GD10204.	GD24744.	0.616
DsimGD10204	DsimGD25477	B4QF79	B4QAT9	GD10204.	GD25477.	0.470
DsimGD10456	DsimGD11269	B4QDV7	B4QAU0	GD10456.	Dynein light chain roadblock.	0.425
DsimGD10456	DsimGD11487	B4QDV7	B4QEI7	GD10456.	GD11487.	0.425
DsimGD10456	DsimGD11860	B4QDV7	B4QBZ7	GD10456.	GD11860.	0.425
DsimGD10456	DsimGD19225	B4QDV7	B4QUG3	GD10456.	GD19225.	0.745
DsimGD10456	DsimGD21619	B4QDV7	B4Q4V8	GD10456.	Dynein light chain roadblock.	0.425
DsimGD10456	DsimGD22844	B4QDV7	B4Q825	GD10456.	Dynein light chain roadblock.	0.425
DsimGD10456	DsimGD23096	B4QDV7	B4Q740	GD10456.	Dynein light chain.	0.498
DsimGD10456	DsimGD24744	B4QDV7	B4NU11	GD10456.	GD24744.	0.498
DsimGD10456	DsimGD25477	B4QDV7	B4QAT9	GD10456.	GD25477.	0.425
DsimGD11181	DsimGD13441	B4QHW5	B4QMK3	GD11181.	GD13441.	0.437