(16 nodes) Lateral plasma membrane network (Drosophila simulans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DsimGD15677	GD15677. (1205 aa)
	DsimGD21680	GD21680; Belongs to the MAGUK family. (644 aa)
	DsimGD23840	GD23840. (818 aa)
	DsimGD24349	GD24349. (432 aa)
	Tep6	Thioester-containing protein 6. (1762 aa)
	DsimGD21942	GD21942. (956 aa)
	DsimGD23256	GD23256. (2814 aa)
	DsimGD25323	GD25323. (712 aa)
	DsimGD11240	GD11240. (2562 aa)
	DsimGD14966	GD14966. (314 aa)
	DsimGD15041	GD15041. (98 aa)
	DsimGD13438	GD13438. (2447 aa)
	DsimGD21289	GD21289. (2647 aa)
	DsimGD19869	Non-specific serine/threonine protein kinase. (701 aa)
	DsimGD15896	GD15896; Belongs to the integrin alpha chain family. (985 aa)
	DsimGD16875	Integrin beta; Belongs to the integrin beta chain family. (838 aa)

Your Current Organism:

Drosophila simulans

NCBI taxonomy Id: 7240
Other names: D. simulans

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DsimGD13438	DsimGD15677	B4QMK8	B4R6L6	GD13438.	GD15677.	0.996
DsimGD13438	DsimGD19869	B4QMK8	B4QYA7	GD13438.	Non-specific serine/threonine protein kinase.	0.513
DsimGD15677	DsimGD13438	B4R6L6	B4QMK8	GD15677.	GD13438.	0.996
DsimGD15896	DsimGD16875	B4R4A3	B4R6A1	GD15896; Belongs to the integrin alpha chain family.	Integrin beta; Belongs to the integrin beta chain family.	0.998
DsimGD16875	DsimGD15896	B4R6A1	B4R4A3	Integrin beta; Belongs to the integrin beta chain family.	GD15896; Belongs to the integrin alpha chain family.	0.998
DsimGD16875	DsimGD19869	B4R6A1	B4QYA7	Integrin beta; Belongs to the integrin beta chain family.	Non-specific serine/threonine protein kinase.	0.773
DsimGD19869	DsimGD13438	B4QYA7	B4QMK8	Non-specific serine/threonine protein kinase.	GD13438.	0.513
DsimGD19869	DsimGD16875	B4QYA7	B4R6A1	Non-specific serine/threonine protein kinase.	Integrin beta; Belongs to the integrin beta chain family.	0.773